research data . Dataset . 2016

SeqTools: visual tools for manual analysis of sequence alignments

Barson, Gemma; Griffiths, Ed;
  • Published: 15 Dec 2016
  • Publisher: Figshare
Abstract
Abstract Background Manual annotation is essential to create high-quality reference alignments and annotation. Annotators need to be able to view sequence alignments in detail. The SeqTools package provides three tools for viewing different types of sequence alignment: Blixem is a many-to-one browser of pairwise alignments, displaying multiple match sequences aligned against a single reference sequence; Dotter provides a graphical dot-plot view of a single pairwise alignment; and Belvu is a multiple sequence alignment viewer, editor, and phylogenetic tool. These tools were originally part of the AceDB genome database system but have been completely rewritten to ...
Subjects
free text keywords: Biochemistry, Genetics, FOS: Biological sciences, Evolutionary Biology, Ecology, Immunology, FOS: Clinical medicine, 69999 Biological Sciences not elsewhere classified, 80699 Information Systems not elsewhere classified, FOS: Computer and information sciences, 110309 Infectious Diseases, FOS: Health sciences, 60506 Virology, Infectious Diseases, Virology
Funded by
WT
Project
  • Funder: Wellcome Trust (WT)
Communities
Digital Humanities and Cultural Heritage
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figshare
Dataset . 2016
Provider: Datacite
figshare
Dataset . 2016
Provider: Datacite
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