Using Text Analytics in MATLAB to explore research articles related to COVID-19 and other coronaviruses.

Bidirectional Encoder Representations from Transformers with Graph Transformer (BERT-GT) is a tool for cross-sentence n-ary relation extraction.

Biomedical Confident Itemsets Explanation (BioCIE) is a tool aiming at post-hoc explanation of black-box machine learning models for biomedical text classification. Using sources of domain knowledge and a confident itemset mining method, BioCIE discretizes the decision ...

Auto-CORPus (Automated and Consistent Outputs from Research Publications) is a automated pipeline that cleans HTML files from biomedical literature. The output is a single JSON file that contains the text for each section, table data in machine-readable format and lists...

Visualisation and data mining of the public database of biomedical literature PubMed

PubChem and ChEMBL Beyond Lipinski.

PnGT stand for Physicochemical n-Grams Tool. It is a tool for protein physicochemical descriptor generation . Physicochemical n-Grams Tool (PnGT) is an open source standalone software for calculating physicochemical descriptors of protein developed using the Python scri...

T Cell Relation Extraction (TCRE) - Extracting T Cell Function and Differentiation Characteristics from the Biomedical Literature.

Interactive pathway modeling using natural language with automated assembly.

Collaboration of deep neural networks for biomedical named entity recognition.