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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Soiland-Reyes, Stian; Sefton, Peter; Crosas, Mercè; Castro, Leyla Jael; +12 Authors

    An increasing number of researchers support reproducibility by including pointers to and descriptions of datasets, software and methods in their publications. However, scientific articles may be ambiguous, incomplete and difficult to process by automated systems. In this paper we introduce RO-Crate, an open, community-driven, and lightweight approach to packaging research artefacts along with their metadata in a machine readable manner. RO-Crate is based on Schema$.$org annotations in JSON-LD, aiming to establish best practices to formally describe metadata in an accessible and practical way for their use in a wide variety of situations. An RO-Crate is a structured archive of all the items that contributed to a research outcome, including their identifiers, provenance, relations and annotations. As a general purpose packaging approach for data and their metadata, RO-Crate is used across multiple areas, including bioinformatics, digital humanities and regulatory sciences. By applying "just enough" Linked Data standards, RO-Crate simplifies the process of making research outputs FAIR while also enhancing research reproducibility. An RO-Crate for this article is available at https://www.researchobject.org/2021-packaging-research-artefacts-with-ro-crate/ Comment: 42 pages. Submitted to Data Science

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ NARCIS; Data Sciencearrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Data Science
    Article . 2022 . Peer-reviewed
    License: CC BY
    Data sources: Sygma; Crossref
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Data Science
    Article . 2022
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Data Science
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    ZENODO
    Article . 2022
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    Research . 2021
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    arXiv.org e-Print Archive
    Other literature type . Preprint . 2021
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    ZENODO
    Article . 2022 . Peer-reviewed
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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    https://doi.org/10.48550/arxiv...
    Article . 2021
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ NARCIS; Data Sciencearrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      Research . 2021
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      arXiv.org e-Print Archive
      Other literature type . Preprint . 2021
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
      Article . 2022 . Peer-reviewed
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      https://doi.org/10.48550/arxiv...
      Article . 2021
      License: CC BY
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Stern, Dieter;

    At the turn of the sixteenth and the seventeenth centuries, syllabic devotional songs in Ruthenian (RDS) make their first appearance as occasional appendices or notes in the margins of manuscripts serving quite divergent functions (triodia, evangelia and the like). The first systematic collections of RDS were compiled abroad by Ruthenian monks having left Ukraine for monasteries around Moscow from the 1660s onwards. It required several more decades, till the beginning of the eighteenth century, before these songs were also being systematically collected in song manuscripts throughout the Ruthenian lands themselves. The article argues against established views to the effect that this documentary gap was due to a massive loss of seventeenth-century Ruthenian song manuscripts. It should rather be taken at face value as an indication that some perceptual change with respect to devotional songs is likely to have taken place among Ruthenian literate classes at the beginning of the eighteenth century. It is argued that the rise of Ruthenian song manuscripts marks the beginning of a collecting culture, which treats devotional songs as a cherished and coveted collectable, where heretofore no particular value seems to have been accorded to these songs. The article explores the social profiles of song collectors and the individual makeup of song collections to offer a hypothetical outline of this emerging collecting culture, addressing issues of modes of exchange, methods of collecting and compiling, the specific relationship between collector and collectable, with a view to arguing for a highly individualized and intimate culture between private devotion and incipient object-oriented consumerism.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ East/West: Journal o...arrow_drop_down
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    East/West: Journal of Ukrainian Studies; Érudit
    Article . 2021 . Peer-reviewed
    License: CC BY NC ND
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    East/West: Journal of Ukrainian Studies
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    DOAJ
    Article . 2021
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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ East/West: Journal o...arrow_drop_down
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      East/West: Journal of Ukrainian Studies; Érudit
      Article . 2021 . Peer-reviewed
      License: CC BY NC ND
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      East/West: Journal of Ukrainian Studies
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Jennifer Craig;

    Morphological and compositional analysis of glass beads from three shipwrecks in the Indian Ocean world has increased our understanding of the chronology and distribution of mid-fifteenth to mid-seventeenth century glass.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Antiquityarrow_drop_down
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    Antiquity
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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Antiquity
    Article . 2021 . Peer-reviewed
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Antiquityarrow_drop_down
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      Antiquity
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      Antiquity
      Article . 2021 . Peer-reviewed
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    Authors: Samuels, J. Troy; Cohen, Sheira; Johnson, Tyler; Moses, Victoria; +7 Authors

    The ancient city of Gabii—an Italian polity of the first millennium BC and a peer to early Rome—has often been presented as an example of urban decline, a counterpoint to Rome's rise from a collection of hilltop huts to a Mediterranean hegemon. Here the authors draw on the results from recent excavations at Gabii that challenge such simplistic models of urban history. Diachronic evidence documenting activity at the site over the course of 1400 years highlights shifting values and rhythms materialised in the maintenance, transformation and abandonment of different urban components. This complex picture of adaptation and resilience provides a model of ancient urbanism that calls into question outdated narratives of urban success and failure.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ CORE (RIOXX-UK Aggre...arrow_drop_down
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    Antiquity
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    Antiquity
    Article . 2021 . Peer-reviewed
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      Antiquity
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      Antiquity
      Article . 2021 . Peer-reviewed
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    Authors: Eveline Pinseel; Bart Van de Vijver; Alexander P. Wolfe; Margaret A. Harper; +9 Authors

    Abstract: Despite evidence for microbial endemism, an understanding of the impact of geological and paleoclimate events on the evolution of regional protist communities remains elusive. Here, we provide insights into the biogeographical history of Antarctic freshwater diatoms, using lacustrine fossils from mid-Miocene and Quaternary Antarctica, and dovetail this dataset with a global inventory of modern freshwater diatom communities. We reveal the existence of a diverse mid-Miocene diatom flora bearing similarities with several former Gondwanan landmasses. Miocene cooling and Plio-Pleistocene glaciations triggered multiple extinction waves, resulting in the selective depauperation of this flora. Although extinction dominated, in situ speciation and new colonizations ultimately shaped the species-poor, yet highly adapted and largely endemic, modern Antarctic diatom flora. Our results provide a more holistic view on the scale of biodiversity turnover in Neogene and Pleistocene Antarctica than the fragmentary perspective offered by macrofossils and underscore the sensitivity of lacustrine microbiota to large-scale climate perturbations.

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    Science Advances
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    Science Advances
    Article . 2021
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    Authors: John, Alison;

    Greek had held an important place in Roman society and culture since the Late Republican period, and educated Romans were expected to be bilingual and well versed in both Greek and Latin literature. The Roman school ‘curriculum’ was based on Hellenistic educational culture, and in the De grammaticis et rhetoribus Suetonius says that the earliest teachers in Rome, Livius and Ennius, were ‘poets and half Greeks’ (poetae et semigraeci), who taught both Latin and Greek ‘publicly and privately’ (domi forisque docuisse) and ‘merely clarified the meaning of Greek authors or gave exemplary readings from their own Latin compositions’ (nihil amplius quam Graecos interpretabantur aut si quid ipsi Latine composuissent praelegebant, Gram. et rhet. 1–2). Cicero, the Latin neoteric poets and Horace are obvious examples of bilingual educated Roman aristocrats, but also throughout the Imperial period a properly educated Roman would be learned in utraque lingua. The place of Greek in Quintilian's Institutio Oratoria reveals the importance and prevalence of Greek in Roman education and literature in the late first century a.d. Quintilian argues that children should learn both Greek and Latin but that it is best to begin with Greek. Famously, in the second century a.d. the Roman author Apuleius gave speeches in Greek to audiences in Carthage, and in his Apologia mocked his accusers for their ignorance of Greek.

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    The Classical Quarterly
    Article . 2020 . Peer-reviewed
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      The Classical Quarterly
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    Authors: Lidio M. Valdez; Katrina J. Bettcher; Marcelino N. Huamaní;

    Llamas were the preferred sacrificial animals of the Inka Empire, their ritual value second only to that of human beings. Recent archaeological excavations at the Inka settlement of Tambo Viejo in the Acari Valley on the Peruvian south coast have revealed a number of ritually sacrificed llamas in a unique context. This new evidence demonstrates that the establishment of Tambo Viejo as a provincial Inka centre involved the performance of ritual practices that included the dedicatory sacrifice of domesticated animals. These rituals materialised Inka imperial ideology and ultimately enabled the legitimisation of Inka presence in a conquered location.

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    Antiquity
    Article . 2020 . Peer-reviewed
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      Antiquity
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    Authors: Adrian L. Collins; Martin S. A. Blackwell; Pascal Boeckx; Charlotte-Anne Chivers; +20 Authors

    Purpose This review of sediment source fingerprinting assesses the current state-of-the-art, remaining challenges and emerging themes. It combines inputs from international scientists either with track records in the approach or with expertise relevant to progressing the science. Methods Web of Science and Google Scholar were used to review published papers spanning the period 2013-2019, inclusive, to confirm publication trends in quantities of papers by study area country and the types of tracers used. The most recent (2018-2019, inclusive) papers were also benchmarked using a methodological decision-tree published in 2017. Scope Areas requiring further research and international consensus on methodological detail are reviewed, and these comprise spatial variability in tracers and corresponding sampling implications for end-members, temporal variability in tracers and sampling implications for end-members and target sediment, tracer conservation and knowledge-based pre-selection, the physico-chemical basis for source discrimination and dissemination of fingerprinting results to stakeholders. Emerging themes are also discussed: novel tracers, concentration-dependence for biomarkers, combining sediment fingerprinting and age-dating, applications to sediment-bound pollutants, incorporation of supportive spatial information to augment discrimination and modelling , aeolian sediment source fingerprinting, integration with process-based models and development of open-access software tools for data processing. Conclusions The popularity of sediment source fingerprinting continues on an upward trend globally, but with this growth comes issues surrounding lack of standardisation and procedural diversity. Nonetheless, the last 2 years have also evidenced growing uptake of critical requirements for robust applications and this review is intended to signpost investigators, both old and new, towards these benchmarks and remaining research challenges for, and emerging options for different applications of, the fingerprinting approach. International audience

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    Journal of Soils and Sediments
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    Authors: A. Gagnon-Poiré; A. Gagnon-Poiré; A. Gagnon-Poiré; P. Brigode; +8 Authors

    Analysis of short sediment cores collected in Grand Lake, Labrador, revealed that this lake is an excellent candidate for the preservation of a laminated sediment record. The great depth of Grand Lake, the availability of fine sediments along its tributaries and its important seasonal river inflow have favoured the formation of a 160-year-long clastic varved sequence. Each varve represents 1 hydrological year. Varve formation is mainly related to spring discharge conditions with contributions from summer and autumn rainfall events. The statistically significant relation between varve parameters and the Naskaupi River discharge observations provided the opportunity to develop local hydrological reconstructions beyond the instrumental period. The combined detrital layer thickness and the particle size (99th percentile) series extracted from each varve yield the strongest correlations with instrumental data (r=0.68 and 0.75 respectively) and have been used to reconstruct the respective Naskaupi River mean and maximum annual discharges over the 1856–2016 period. The reconstructed Q-mean series suggest that high Q-mean years occurred during the 1920–1960 period, and a slight decrease in Q-mean took place during the second half of the 20th century. Independent reconstructions based on rainfall–runoff modelling of the watershed from historical reanalysis of global geopotential height fields display a significant correlation with the reconstructed Naskaupi River discharge based on varve physical parameters. The Grand Lake varved sequence contains a regional hydrological signal, as suggested by the statistically significant relation between the combined detrital layer thickness series and the observed Labrador region Q-mean series extracted from five watersheds of different sizes. International audience

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    Climate of the Past (CP)
    Other literature type . 2020
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    Climate of the Past (CP)
    Article . 2021 . Peer-reviewed
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    Climate of the Past (CP); Climate of the Past
    Article . Preprint . 2021
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    https://doi.org/10.5194/cp-202...
    Preprint . 2020 . Peer-reviewed
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Ghent University Aca...arrow_drop_down
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      Climate of the Past (CP)
      Other literature type . 2020
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Climate of the Past (CP)
      Article . 2021 . Peer-reviewed
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      Climate of the Past (CP); Climate of the Past
      Article . Preprint . 2021
      License: CC BY
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      https://doi.org/10.5194/cp-202...
      Preprint . 2020 . Peer-reviewed
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Pieter Gurdebeke; Kenneth Neil Mertens; Pjotr Meyvisch; Kara Bogus; +2 Authors

    A new dinoflagellate cyst genus and species are described here as Hiddenocysta gen. nov. and Hiddenocysta matsuokae sp. nov. from Holocene sediments in a core from the west coast of Vancouver Island (British Columbia, Canada). The genus Hiddenocysta encompasses spherical to ovoid skolochorate cysts, characterized by a gonyaulacoid plate pattern and a 2P precingular archeopyle. The species H. matsuokae is characterized by a granular wall and slender trifurcate processes with heavily perforated process bases. Two end members are described here based on process morphology and number of processes (formas 1 and 2). Cyst wall chemistry is analyzed using micro-Fourier transform infrared (FTIR) spectroscopy and reveals a unique dinosporin composition consistent with a gonyaulacoid autotrophic feeding strategy.

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    Other literature type . 2020
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    Palynology
    Article
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    Other literature type . 2020
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    Palynology
    Article . 2020 . Peer-reviewed
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Ghent University Aca...arrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      Other literature type . 2020
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      Palynology
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      Palynology
      Article . 2020 . Peer-reviewed
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Soiland-Reyes, Stian; Sefton, Peter; Crosas, Mercè; Castro, Leyla Jael; +12 Authors

    An increasing number of researchers support reproducibility by including pointers to and descriptions of datasets, software and methods in their publications. However, scientific articles may be ambiguous, incomplete and difficult to process by automated systems. In this paper we introduce RO-Crate, an open, community-driven, and lightweight approach to packaging research artefacts along with their metadata in a machine readable manner. RO-Crate is based on Schema$.$org annotations in JSON-LD, aiming to establish best practices to formally describe metadata in an accessible and practical way for their use in a wide variety of situations. An RO-Crate is a structured archive of all the items that contributed to a research outcome, including their identifiers, provenance, relations and annotations. As a general purpose packaging approach for data and their metadata, RO-Crate is used across multiple areas, including bioinformatics, digital humanities and regulatory sciences. By applying "just enough" Linked Data standards, RO-Crate simplifies the process of making research outputs FAIR while also enhancing research reproducibility. An RO-Crate for this article is available at https://www.researchobject.org/2021-packaging-research-artefacts-with-ro-crate/ Comment: 42 pages. Submitted to Data Science

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ NARCIS; Data Sciencearrow_drop_down
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    Data Science
    Article . 2022 . Peer-reviewed
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    Other literature type . Preprint . 2021
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    https://doi.org/10.48550/arxiv...
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      Other literature type . Preprint . 2021
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      https://doi.org/10.48550/arxiv...
      Article . 2021
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    Authors: Stern, Dieter;

    At the turn of the sixteenth and the seventeenth centuries, syllabic devotional songs in Ruthenian (RDS) make their first appearance as occasional appendices or notes in the margins of manuscripts serving quite divergent functions (triodia, evangelia and the like). The first systematic collections of RDS were compiled abroad by Ruthenian monks having left Ukraine for monasteries around Moscow from the 1660s onwards. It required several more decades, till the beginning of the eighteenth century, before these songs were also being systematically collected in song manuscripts throughout the Ruthenian lands themselves. The article argues against established views to the effect that this documentary gap was due to a massive loss of seventeenth-century Ruthenian song manuscripts. It should rather be taken at face value as an indication that some perceptual change with respect to devotional songs is likely to have taken place among Ruthenian literate classes at the beginning of the eighteenth century. It is argued that the rise of Ruthenian song manuscripts marks the beginning of a collecting culture, which treats devotional songs as a cherished and coveted collectable, where heretofore no particular value seems to have been accorded to these songs. The article explores the social profiles of song collectors and the individual makeup of song collections to offer a hypothetical outline of this emerging collecting culture, addressing issues of modes of exchange, methods of collecting and compiling, the specific relationship between collector and collectable, with a view to arguing for a highly individualized and intimate culture between private devotion and incipient object-oriented consumerism.

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    East/West: Journal of Ukrainian Studies; Érudit
    Article . 2021 . Peer-reviewed
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    East/West: Journal of Ukrainian Studies
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      East/West: Journal of Ukrainian Studies; Érudit
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    Authors: Jennifer Craig;

    Morphological and compositional analysis of glass beads from three shipwrecks in the Indian Ocean world has increased our understanding of the chronology and distribution of mid-fifteenth to mid-seventeenth century glass.

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    Antiquity
    Article . 2021 . Peer-reviewed
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    Authors: Samuels, J. Troy; Cohen, Sheira; Johnson, Tyler; Moses, Victoria; +7 Authors

    The ancient city of Gabii—an Italian polity of the first millennium BC and a peer to early Rome—has often been presented as an example of urban decline, a counterpoint to Rome's rise from a collection of hilltop huts to a Mediterranean hegemon. Here the authors draw on the results from recent excavations at Gabii that challenge such simplistic models of urban history. Diachronic evidence documenting activity at the site over the course of 1400 years highlights shifting values and rhythms materialised in the maintenance, transformation and abandonment of different urban components. This complex picture of adaptation and resilience provides a model of ancient urbanism that calls into question outdated narratives of urban success and failure.

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    Antiquity
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      Antiquity
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    Authors: Eveline Pinseel; Bart Van de Vijver; Alexander P. Wolfe; Margaret A. Harper; +9 Authors

    Abstract: Despite evidence for microbial endemism, an understanding of the impact of geological and paleoclimate events on the evolution of regional protist communities remains elusive. Here, we provide insights into the biogeographical history of Antarctic freshwater diatoms, using lacustrine fossils from mid-Miocene and Quaternary Antarctica, and dovetail this dataset with a global inventory of modern freshwater diatom communities. We reveal the existence of a diverse mid-Miocene diatom flora bearing similarities with several former Gondwanan landmasses. Miocene cooling and Plio-Pleistocene glaciations triggered multiple extinction waves, resulting in the selective depauperation of this flora. Although extinction dominated, in situ speciation and new colonizations ultimately shaped the species-poor, yet highly adapted and largely endemic, modern Antarctic diatom flora. Our results provide a more holistic view on the scale of biodiversity turnover in Neogene and Pleistocene Antarctica than the fragmentary perspective offered by macrofossils and underscore the sensitivity of lacustrine microbiota to large-scale climate perturbations.

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    Science Advances
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    Science Advances
    Article . 2021
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    Authors: John, Alison;

    Greek had held an important place in Roman society and culture since the Late Republican period, and educated Romans were expected to be bilingual and well versed in both Greek and Latin literature. The Roman school ‘curriculum’ was based on Hellenistic educational culture, and in the De grammaticis et rhetoribus Suetonius says that the earliest teachers in Rome, Livius and Ennius, were ‘poets and half Greeks’ (poetae et semigraeci), who taught both Latin and Greek ‘publicly and privately’ (domi forisque docuisse) and ‘merely clarified the meaning of Greek authors or gave exemplary readings from their own Latin compositions’ (nihil amplius quam Graecos interpretabantur aut si quid ipsi Latine composuissent praelegebant, Gram. et rhet. 1–2). Cicero, the Latin neoteric poets and Horace are obvious examples of bilingual educated Roman aristocrats, but also throughout the Imperial period a properly educated Roman would be learned in utraque lingua. The place of Greek in Quintilian's Institutio Oratoria reveals the importance and prevalence of Greek in Roman education and literature in the late first century a.d. Quintilian argues that children should learn both Greek and Latin but that it is best to begin with Greek. Famously, in the second century a.d. the Roman author Apuleius gave speeches in Greek to audiences in Carthage, and in his Apologia mocked his accusers for their ignorance of Greek.

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    The Classical Quarterly
    Article . 2020 . Peer-reviewed
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      The Classical Quarterly
      Article . 2020 . Peer-reviewed
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    Authors: Lidio M. Valdez; Katrina J. Bettcher; Marcelino N. Huamaní;

    Llamas were the preferred sacrificial animals of the Inka Empire, their ritual value second only to that of human beings. Recent archaeological excavations at the Inka settlement of Tambo Viejo in the Acari Valley on the Peruvian south coast have revealed a number of ritually sacrificed llamas in a unique context. This new evidence demonstrates that the establishment of Tambo Viejo as a provincial Inka centre involved the performance of ritual practices that included the dedicatory sacrifice of domesticated animals. These rituals materialised Inka imperial ideology and ultimately enabled the legitimisation of Inka presence in a conquered location.

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    Antiquity
    Article . 2020 . Peer-reviewed
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      Antiquity
      Article . 2020 . Peer-reviewed
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    Authors: Adrian L. Collins; Martin S. A. Blackwell; Pascal Boeckx; Charlotte-Anne Chivers; +20 Authors

    Purpose This review of sediment source fingerprinting assesses the current state-of-the-art, remaining challenges and emerging themes. It combines inputs from international scientists either with track records in the approach or with expertise relevant to progressing the science. Methods Web of Science and Google Scholar were used to review published papers spanning the period 2013-2019, inclusive, to confirm publication trends in quantities of papers by study area country and the types of tracers used. The most recent (2018-2019, inclusive) papers were also benchmarked using a methodological decision-tree published in 2017. Scope Areas requiring further research and international consensus on methodological detail are reviewed, and these comprise spatial variability in tracers and corresponding sampling implications for end-members, temporal variability in tracers and sampling implications for end-members and target sediment, tracer conservation and knowledge-based pre-selection, the physico-chemical basis for source discrimination and dissemination of fingerprinting results to stakeholders. Emerging themes are also discussed: novel tracers, concentration-dependence for biomarkers, combining sediment fingerprinting and age-dating, applications to sediment-bound pollutants, incorporation of supportive spatial information to augment discrimination and modelling , aeolian sediment source fingerprinting, integration with process-based models and development of open-access software tools for data processing. Conclusions The popularity of sediment source fingerprinting continues on an upward trend globally, but with this growth comes issues surrounding lack of standardisation and procedural diversity. Nonetheless, the last 2 years have also evidenced growing uptake of critical requirements for robust applications and this review is intended to signpost investigators, both old and new, towards these benchmarks and remaining research challenges for, and emerging options for different applications of, the fingerprinting approach. International audience

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    Journal of Soils and Sediments
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    Authors: A. Gagnon-Poiré; A. Gagnon-Poiré; A. Gagnon-Poiré; P. Brigode; +8 Authors

    Analysis of short sediment cores collected in Grand Lake, Labrador, revealed that this lake is an excellent candidate for the preservation of a laminated sediment record. The great depth of Grand Lake, the availability of fine sediments along its tributaries and its important seasonal river inflow have favoured the formation of a 160-year-long clastic varved sequence. Each varve represents 1 hydrological year. Varve formation is mainly related to spring discharge conditions with contributions from summer and autumn rainfall events. The statistically significant relation between varve parameters and the Naskaupi River discharge observations provided the opportunity to develop local hydrological reconstructions beyond the instrumental period. The combined detrital layer thickness and the particle size (99th percentile) series extracted from each varve yield the strongest correlations with instrumental data (r=0.68 and 0.75 respectively) and have been used to reconstruct the respective Naskaupi River mean and maximum annual discharges over the 1856–2016 period. The reconstructed Q-mean series suggest that high Q-mean years occurred during the 1920–1960 period, and a slight decrease in Q-mean took place during the second half of the 20th century. Independent reconstructions based on rainfall–runoff modelling of the watershed from historical reanalysis of global geopotential height fields display a significant correlation with the reconstructed Naskaupi River discharge based on varve physical parameters. The Grand Lake varved sequence contains a regional hydrological signal, as suggested by the statistically significant relation between the combined detrital layer thickness series and the observed Labrador region Q-mean series extracted from five watersheds of different sizes. International audience

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    Climate of the Past (CP)
    Other literature type . 2020
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    Climate of the Past (CP)
    Article . 2021 . Peer-reviewed
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    Climate of the Past (CP); Climate of the Past
    Article . Preprint . 2021
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    https://doi.org/10.5194/cp-202...
    Preprint . 2020 . Peer-reviewed
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      Climate of the Past (CP)
      Other literature type . 2020
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      Climate of the Past (CP)
      Article . 2021 . Peer-reviewed
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      Climate of the Past (CP); Climate of the Past
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      https://doi.org/10.5194/cp-202...
      Preprint . 2020 . Peer-reviewed
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    Authors: Pieter Gurdebeke; Kenneth Neil Mertens; Pjotr Meyvisch; Kara Bogus; +2 Authors

    A new dinoflagellate cyst genus and species are described here as Hiddenocysta gen. nov. and Hiddenocysta matsuokae sp. nov. from Holocene sediments in a core from the west coast of Vancouver Island (British Columbia, Canada). The genus Hiddenocysta encompasses spherical to ovoid skolochorate cysts, characterized by a gonyaulacoid plate pattern and a 2P precingular archeopyle. The species H. matsuokae is characterized by a granular wall and slender trifurcate processes with heavily perforated process bases. Two end members are described here based on process morphology and number of processes (formas 1 and 2). Cyst wall chemistry is analyzed using micro-Fourier transform infrared (FTIR) spectroscopy and reveals a unique dinosporin composition consistent with a gonyaulacoid autotrophic feeding strategy.

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    Other literature type . 2020
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    Palynology
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    Palynology
    Article . 2020 . Peer-reviewed
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      Palynology
      Article
      Data sources: UnpayWall
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      Other literature type . 2020
      License: CC BY
      Data sources: Datacite
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      Palynology
      Article . 2020 . Peer-reviewed
      Data sources: Crossref
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