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Research data keyboard_double_arrow_right Dataset 2020Publisher:figshare Funded by:NHMRC | Protecting the public fro..., EC | COMPARE, ARC | Australian Laureate Fello...NHMRC| Protecting the public from emerging infectious diseases ,EC| COMPARE ,ARC| Australian Laureate Fellowships - Grant ID: FL170100022Authors: Marcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; +5 AuthorsMarcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; Iredell, Jonathan R.; Meyer, Wieland; Lund, Ole; Sorrell, Tania C.; Holmes, Edward C.;Additional file 8: Table S6. Fungal genome sequences removed from the RefSeq fungi database (RefSeq-f-partial) to mimic the effects of classifying species without reference genomes.
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For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2020Publisher:figshare Funded by:NHMRC | Protecting the public fro..., EC | COMPARE, ARC | Australian Laureate Fello...NHMRC| Protecting the public from emerging infectious diseases ,EC| COMPARE ,ARC| Australian Laureate Fellowships - Grant ID: FL170100022Authors: Marcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; +5 AuthorsMarcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; Iredell, Jonathan R.; Meyer, Wieland; Lund, Ole; Sorrell, Tania C.; Holmes, Edward C.;Additional file 2: Table S1. Precision, recall and F1 scores obtained for fungal communities.
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For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Collection 2020Publisher:figshare Funded by:EC | COMPARE, NHMRC | Protecting the public fro..., ARC | Australian Laureate Fello...EC| COMPARE ,NHMRC| Protecting the public from emerging infectious diseases ,ARC| Australian Laureate Fellowships - Grant ID: FL170100022Authors: Marcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; +5 AuthorsMarcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; Iredell, Jonathan R.; Meyer, Wieland; Lund, Ole; Sorrell, Tania C.; Holmes, Edward C.;Abstract There is an increasing demand for accurate and fast metagenome classifiers that can not only identify bacteria, but all members of a microbial community. We used a recently developed concept in read mapping to develop a highly accurate metagenomic classification pipeline named CCMetagen. The pipeline substantially outperforms other commonly used software in identifying bacteria and fungi and can efficiently use the entire NCBI nucleotide collection as a reference to detect species with incomplete genome data from all biological kingdoms. CCMetagen is user-friendly, and the results can be easily integrated into microbial community analysis software for streamlined and automated microbiome studies.
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For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2020Publisher:figshare Funded by:EC | COMPARE, ARC | Australian Laureate Fello..., NHMRC | Protecting the public fro...EC| COMPARE ,ARC| Australian Laureate Fellowships - Grant ID: FL170100022 ,NHMRC| Protecting the public from emerging infectious diseasesAuthors: Marcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; +5 AuthorsMarcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; Iredell, Jonathan R.; Meyer, Wieland; Lund, Ole; Sorrell, Tania C.; Holmes, Edward C.;Additional file 4: Table S2. Precision, recall and F1 scores obtained with the CCMetagen analysis with assembled sequence reads.
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For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2020Publisher:figshare Funded by:NHMRC | Protecting the public fro..., ARC | Australian Laureate Fello..., EC | COMPARENHMRC| Protecting the public from emerging infectious diseases ,ARC| Australian Laureate Fellowships - Grant ID: FL170100022 ,EC| COMPAREAuthors: Marcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; +5 AuthorsMarcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; Iredell, Jonathan R.; Meyer, Wieland; Lund, Ole; Sorrell, Tania C.; Holmes, Edward C.;Additional file 6: Table S4. Species observed in the metatranscriptome of wild birds (biological data set 2) and their abundance.
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For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2020Publisher:figshare Funded by:ARC | Australian Laureate Fello..., EC | COMPARE, NHMRC | Protecting the public fro...ARC| Australian Laureate Fellowships - Grant ID: FL170100022 ,EC| COMPARE ,NHMRC| Protecting the public from emerging infectious diseasesAuthors: Marcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; +5 AuthorsMarcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; Iredell, Jonathan R.; Meyer, Wieland; Lund, Ole; Sorrell, Tania C.; Holmes, Edward C.;Additional file 7: Table S5. Genome sequences and species used to simulate fungal communities.
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For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2020Publisher:figshare Funded by:NHMRC | Protecting the public fro..., ARC | Australian Laureate Fello..., EC | COMPARENHMRC| Protecting the public from emerging infectious diseases ,ARC| Australian Laureate Fellowships - Grant ID: FL170100022 ,EC| COMPAREAuthors: Marcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; +5 AuthorsMarcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; Iredell, Jonathan R.; Meyer, Wieland; Lund, Ole; Sorrell, Tania C.; Holmes, Edward C.;Additional file 5: Table S3. Species and transcripts observed in the metatranscriptome of a mock fungal community (biological data set 1).
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For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2018 EnglishPublisher:PANGAEA Funded by:UKRI | Where did all the CO2 go?..., EC | COCONET, ARC | Ocean Acidification in a ... +1 projectsUKRI| Where did all the CO2 go? Insights from boron isotopes in deep-sea corals ,EC| COCONET ,ARC| Ocean Acidification in a Rapidly Increasing CO2 World ,EC| HERMIONERae, James W B; Burke, Andrea; Robinson, Laura F; Adkins, Jess F; Chen, Tianyu; Cole, Catherine; Greenop, Rosanna; Li, Tao; Littley, Eloise; Nita, Dan; Stewart, Joe; Taylor, Ben J;Latitude, Longitude, and Elevation values are given as averages where samples were collected by dredge. DIC in McCulloch sample set has been calculated from reported ALK and pH. Carbonate system parameters in Anagnostou sample set are as re-calculated in Stewart et al., 2016, using GLODAP ALK and DIC. Carbonate system parameters for new data reported here are calculated from GLODAPv2 ALK.Coral subsamples represent different solid pieces/powder subsampled from the same specimen. Note that Anagnostou et al. 2011 give a weighted average of these values, which is reported in the d11Bcoral column.
PANGAEA - Data Publi... arrow_drop_down PANGAEA - Data Publisher for Earth and Environmental ScienceDataset . 2018License: CC BYData sources: Dataciteadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!more_vert PANGAEA - Data Publi... arrow_drop_down PANGAEA - Data Publisher for Earth and Environmental ScienceDataset . 2018License: CC BYData sources: Dataciteadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset , Collection 2012 EnglishPublisher:PANGAEA Funded by:EC | COCONET, ARC | Ocean Acidification in a ..., EC | HERMIONEEC| COCONET ,ARC| Ocean Acidification in a Rapidly Increasing CO2 World ,EC| HERMIONEMcCulloch, Malcolm T; Trotter, Julie; Montagna, Paolo; Falter, James L; Dunbar, Robert G; Freiwald, André; Försterra, Günter; López Correa, Matthias; Maier, Cornelia; Rüggeberg, Andres; Taviani, Marco;The boron isotope systematics has been determined for azooxanthellate scleractinian corals from a wide range of both deep-sea and shallow-water environments. The aragonitic coral species, Caryophyllia smithii, Desmophyllum dianthus, Enallopsammia rostrata, Lophelia pertusa, and Madrepora oculata, are all found to have relatively high d11B compositions ranging from 23.2 per mil to 28.7 per mil. These values lie substantially above the pH-dependent inorganic seawater borate equilibrium curve, indicative of strong up-regulation of pH of the internal calcifying fluid (pH(cf)), being elevated by ~0.6-0.8 units (Delta pH) relative to ambient seawater. In contrast, the deep-sea calcitic coral Corallium sp. has a significantly lower d11B composition of 15.5 per mil, with a corresponding lower Delta pH value of ~0.3 units, reflecting the importance of mineralogical control on biological pH up-regulation.The solitary coral D. dianthus was sampled over a wide range of seawater pH(T) and shows an approximate linear correlation with Delta pH(Desmo) = 6.43 - 0.71 pH(T) (r**2 = 0.79). An improved correlation is however found with the closely related parameter of seawater aragonite saturation state, where Delta pH(Desmo) = 1.09 - 0.14 Omega(arag) (r**2 = 0.95), indicating the important control that carbonate saturation state has on calcification. The ability to up-regulate internal pH(cf), and consequently Omega(cf), of the calcifying fluid is therefore a process present in both azooxanthellate and zooxanthellate aragonitic corals, and is attributed to the action of Ca2+ -ATPase in modulating the proton gradient between seawater and the site of calcification. These findings also show that the boron isotopic compositions (d11Bcarb) of aragonitic corals are highly systematic and consistent with direct uptake of the borate species within the biologically controlled extracellular calcifying medium. Supplement to: McCulloch, Malcolm T; Trotter, Julie; Montagna, Paolo; Falter, James L; Dunbar, Robert G; Freiwald, André; Försterra, Günter; López Correa, Matthias; Maier, Cornelia; Rüggeberg, Andres; Taviani, Marco (2012): Resilience of cold-water scleractinian corals to ocean acidification: Boron isotopic systematics of pH and saturation state up-regulation. Geochimica et Cosmochimica Acta, 87, 21-34 Data extracted in the frame of a joint ICSTI/PANGAEA IPY effort, see http://doi.pangaea.de/10.1594/PANGAEA.150150
PANGAEA - Data Publi... arrow_drop_down PANGAEA - Data Publisher for Earth and Environmental ScienceDataset . Collection . 2012License: CC BYPANGAEA - Data Publisher for Earth and Environmental ScienceCollection . 2012License: CC BYData sources: Dataciteadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.eu1 citations 1 popularity Average influence Average impulse Average Powered by BIP!more_vert PANGAEA - Data Publi... arrow_drop_down PANGAEA - Data Publisher for Earth and Environmental ScienceDataset . Collection . 2012License: CC BYPANGAEA - Data Publisher for Earth and Environmental ScienceCollection . 2012License: CC BYData sources: Dataciteadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
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Research data keyboard_double_arrow_right Dataset 2020Publisher:figshare Funded by:NHMRC | Protecting the public fro..., EC | COMPARE, ARC | Australian Laureate Fello...NHMRC| Protecting the public from emerging infectious diseases ,EC| COMPARE ,ARC| Australian Laureate Fellowships - Grant ID: FL170100022Authors: Marcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; +5 AuthorsMarcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; Iredell, Jonathan R.; Meyer, Wieland; Lund, Ole; Sorrell, Tania C.; Holmes, Edward C.;Additional file 8: Table S6. Fungal genome sequences removed from the RefSeq fungi database (RefSeq-f-partial) to mimic the effects of classifying species without reference genomes.
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For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2020Publisher:figshare Funded by:NHMRC | Protecting the public fro..., EC | COMPARE, ARC | Australian Laureate Fello...NHMRC| Protecting the public from emerging infectious diseases ,EC| COMPARE ,ARC| Australian Laureate Fellowships - Grant ID: FL170100022Authors: Marcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; +5 AuthorsMarcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; Iredell, Jonathan R.; Meyer, Wieland; Lund, Ole; Sorrell, Tania C.; Holmes, Edward C.;Additional file 2: Table S1. Precision, recall and F1 scores obtained for fungal communities.
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For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Collection 2020Publisher:figshare Funded by:EC | COMPARE, NHMRC | Protecting the public fro..., ARC | Australian Laureate Fello...EC| COMPARE ,NHMRC| Protecting the public from emerging infectious diseases ,ARC| Australian Laureate Fellowships - Grant ID: FL170100022Authors: Marcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; +5 AuthorsMarcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; Iredell, Jonathan R.; Meyer, Wieland; Lund, Ole; Sorrell, Tania C.; Holmes, Edward C.;Abstract There is an increasing demand for accurate and fast metagenome classifiers that can not only identify bacteria, but all members of a microbial community. We used a recently developed concept in read mapping to develop a highly accurate metagenomic classification pipeline named CCMetagen. The pipeline substantially outperforms other commonly used software in identifying bacteria and fungi and can efficiently use the entire NCBI nucleotide collection as a reference to detect species with incomplete genome data from all biological kingdoms. CCMetagen is user-friendly, and the results can be easily integrated into microbial community analysis software for streamlined and automated microbiome studies.
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You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.6084/m9.figshare.c.4956866.v1&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.6084/m9.figshare.c.4956866.v1&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2020Publisher:figshare Funded by:EC | COMPARE, ARC | Australian Laureate Fello..., NHMRC | Protecting the public fro...EC| COMPARE ,ARC| Australian Laureate Fellowships - Grant ID: FL170100022 ,NHMRC| Protecting the public from emerging infectious diseasesAuthors: Marcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; +5 AuthorsMarcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; Iredell, Jonathan R.; Meyer, Wieland; Lund, Ole; Sorrell, Tania C.; Holmes, Edward C.;Additional file 4: Table S2. Precision, recall and F1 scores obtained with the CCMetagen analysis with assembled sequence reads.
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.6084/m9.figshare.12211694&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.6084/m9.figshare.12211694&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2020Publisher:figshare Funded by:NHMRC | Protecting the public fro..., ARC | Australian Laureate Fello..., EC | COMPARENHMRC| Protecting the public from emerging infectious diseases ,ARC| Australian Laureate Fellowships - Grant ID: FL170100022 ,EC| COMPAREAuthors: Marcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; +5 AuthorsMarcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; Iredell, Jonathan R.; Meyer, Wieland; Lund, Ole; Sorrell, Tania C.; Holmes, Edward C.;Additional file 6: Table S4. Species observed in the metatranscriptome of wild birds (biological data set 2) and their abundance.
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.6084/m9.figshare.12211703&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.6084/m9.figshare.12211703&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2020Publisher:figshare Funded by:ARC | Australian Laureate Fello..., EC | COMPARE, NHMRC | Protecting the public fro...ARC| Australian Laureate Fellowships - Grant ID: FL170100022 ,EC| COMPARE ,NHMRC| Protecting the public from emerging infectious diseasesAuthors: Marcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; +5 AuthorsMarcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; Iredell, Jonathan R.; Meyer, Wieland; Lund, Ole; Sorrell, Tania C.; Holmes, Edward C.;Additional file 7: Table S5. Genome sequences and species used to simulate fungal communities.
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.6084/m9.figshare.12211712.v1&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.6084/m9.figshare.12211712.v1&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2020Publisher:figshare Funded by:NHMRC | Protecting the public fro..., ARC | Australian Laureate Fello..., EC | COMPARENHMRC| Protecting the public from emerging infectious diseases ,ARC| Australian Laureate Fellowships - Grant ID: FL170100022 ,EC| COMPAREAuthors: Marcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; +5 AuthorsMarcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; Iredell, Jonathan R.; Meyer, Wieland; Lund, Ole; Sorrell, Tania C.; Holmes, Edward C.;Additional file 5: Table S3. Species and transcripts observed in the metatranscriptome of a mock fungal community (biological data set 1).
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.6084/m9.figshare.12211700&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.6084/m9.figshare.12211700&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2018 EnglishPublisher:PANGAEA Funded by:UKRI | Where did all the CO2 go?..., EC | COCONET, ARC | Ocean Acidification in a ... +1 projectsUKRI| Where did all the CO2 go? Insights from boron isotopes in deep-sea corals ,EC| COCONET ,ARC| Ocean Acidification in a Rapidly Increasing CO2 World ,EC| HERMIONERae, James W B; Burke, Andrea; Robinson, Laura F; Adkins, Jess F; Chen, Tianyu; Cole, Catherine; Greenop, Rosanna; Li, Tao; Littley, Eloise; Nita, Dan; Stewart, Joe; Taylor, Ben J;Latitude, Longitude, and Elevation values are given as averages where samples were collected by dredge. DIC in McCulloch sample set has been calculated from reported ALK and pH. Carbonate system parameters in Anagnostou sample set are as re-calculated in Stewart et al., 2016, using GLODAP ALK and DIC. Carbonate system parameters for new data reported here are calculated from GLODAPv2 ALK.Coral subsamples represent different solid pieces/powder subsampled from the same specimen. Note that Anagnostou et al. 2011 give a weighted average of these values, which is reported in the d11Bcoral column.
PANGAEA - Data Publi... arrow_drop_down PANGAEA - Data Publisher for Earth and Environmental ScienceDataset . 2018License: CC BYData sources: Dataciteadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1594/pangaea.894760&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!more_vert PANGAEA - Data Publi... arrow_drop_down PANGAEA - Data Publisher for Earth and Environmental ScienceDataset . 2018License: CC BYData sources: Dataciteadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1594/pangaea.894760&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset , Collection 2012 EnglishPublisher:PANGAEA Funded by:EC | COCONET, ARC | Ocean Acidification in a ..., EC | HERMIONEEC| COCONET ,ARC| Ocean Acidification in a Rapidly Increasing CO2 World ,EC| HERMIONEMcCulloch, Malcolm T; Trotter, Julie; Montagna, Paolo; Falter, James L; Dunbar, Robert G; Freiwald, André; Försterra, Günter; López Correa, Matthias; Maier, Cornelia; Rüggeberg, Andres; Taviani, Marco;The boron isotope systematics has been determined for azooxanthellate scleractinian corals from a wide range of both deep-sea and shallow-water environments. The aragonitic coral species, Caryophyllia smithii, Desmophyllum dianthus, Enallopsammia rostrata, Lophelia pertusa, and Madrepora oculata, are all found to have relatively high d11B compositions ranging from 23.2 per mil to 28.7 per mil. These values lie substantially above the pH-dependent inorganic seawater borate equilibrium curve, indicative of strong up-regulation of pH of the internal calcifying fluid (pH(cf)), being elevated by ~0.6-0.8 units (Delta pH) relative to ambient seawater. In contrast, the deep-sea calcitic coral Corallium sp. has a significantly lower d11B composition of 15.5 per mil, with a corresponding lower Delta pH value of ~0.3 units, reflecting the importance of mineralogical control on biological pH up-regulation.The solitary coral D. dianthus was sampled over a wide range of seawater pH(T) and shows an approximate linear correlation with Delta pH(Desmo) = 6.43 - 0.71 pH(T) (r**2 = 0.79). An improved correlation is however found with the closely related parameter of seawater aragonite saturation state, where Delta pH(Desmo) = 1.09 - 0.14 Omega(arag) (r**2 = 0.95), indicating the important control that carbonate saturation state has on calcification. The ability to up-regulate internal pH(cf), and consequently Omega(cf), of the calcifying fluid is therefore a process present in both azooxanthellate and zooxanthellate aragonitic corals, and is attributed to the action of Ca2+ -ATPase in modulating the proton gradient between seawater and the site of calcification. These findings also show that the boron isotopic compositions (d11Bcarb) of aragonitic corals are highly systematic and consistent with direct uptake of the borate species within the biologically controlled extracellular calcifying medium. Supplement to: McCulloch, Malcolm T; Trotter, Julie; Montagna, Paolo; Falter, James L; Dunbar, Robert G; Freiwald, André; Försterra, Günter; López Correa, Matthias; Maier, Cornelia; Rüggeberg, Andres; Taviani, Marco (2012): Resilience of cold-water scleractinian corals to ocean acidification: Boron isotopic systematics of pH and saturation state up-regulation. Geochimica et Cosmochimica Acta, 87, 21-34 Data extracted in the frame of a joint ICSTI/PANGAEA IPY effort, see http://doi.pangaea.de/10.1594/PANGAEA.150150
PANGAEA - Data Publi... arrow_drop_down PANGAEA - Data Publisher for Earth and Environmental ScienceDataset . Collection . 2012License: CC BYPANGAEA - Data Publisher for Earth and Environmental ScienceCollection . 2012License: CC BYData sources: Dataciteadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1594/pangaea.816120&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu1 citations 1 popularity Average influence Average impulse Average Powered by BIP!more_vert PANGAEA - Data Publi... arrow_drop_down PANGAEA - Data Publisher for Earth and Environmental ScienceDataset . Collection . 2012License: CC BYPANGAEA - Data Publisher for Earth and Environmental ScienceCollection . 2012License: CC BYData sources: Dataciteadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1594/pangaea.816120&type=result"></script>'); --> </script>
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