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11 Research products

  • Digital Humanities and Cultural Heritage
  • 2013-2022
  • Research data
  • Dataset
  • European Commission
  • Fundação para a Ciência e a Tecnologia, I.P.
  • EU

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Paladugu, Roshan; Richter, Kristine Korzow; Valente, Maria João; Gabriel, Sonia; +3 Authors

    MALDI-TOF-MS spectra of extracted collagen from modern reference and archaeological bone samples to develop markers for Zooarchaeology by Mass Spectrometry (ZooMS) to distinguish between Equus species. For each sample digestions were done in both trypsin and chymotrypsin separately. Information about the species of the samples can be found in 'sample metadata.csv' file. Information on the extraction and digestion protocol can be found in the associated manuscript. The sequence data contains alignments of the proteins COL1A1 and COL1A2 for available Equus collagen protein sequences. More information on these files can be found in the corresponding manuscript to this dataset.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    ZENODO
    Dataset . 2022
    License: CC BY
    Data sources: Datacite; Sygma
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    ZENODO
    Dataset . 2022
    License: CC BY
    Data sources: ZENODO; Sygma
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
      Dataset . 2022
      License: CC BY
      Data sources: Datacite; Sygma
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      ZENODO
      Dataset . 2022
      License: CC BY
      Data sources: ZENODO; Sygma
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Pfrengle, Saskia; Neukamm, Judith; Guellil, Meriam; Keller, Marcel; +35 Authors

    Additional file 3: Table S5. SNP distance matrix.

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    figshare
    Dataset . 2021
    License: CC BY
    Data sources: Datacite
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    Dataset . 2021
    License: CC BY
    Data sources: Datacite
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ figsharearrow_drop_down
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      figshare
      Dataset . 2021
      License: CC BY
      Data sources: Datacite
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      figshare
      Dataset . 2021
      License: CC BY
      Data sources: Datacite
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Pfrengle, Saskia; Neukamm, Judith; Guellil, Meriam; Keller, Marcel; +35 Authors

    Additional file 2: Table S4. Result table of the SNP effect analysis.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ figsharearrow_drop_down
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    Dataset . 2021
    License: CC BY
    Data sources: Datacite
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    Dataset . 2021
    License: CC BY
    Data sources: Datacite
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      Dataset . 2021
      License: CC BY
      Data sources: Datacite
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      Dataset . 2021
      License: CC BY
      Data sources: Datacite
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Dietze, Elisabeth; Karger, Cornelia; Mangelsdorf, Kai;

    We freeze-dried and homogenized 44 samples of c. 0.7-1.8 g dry sediment from core PG1351 covering late glacials and interglacials of MIS 8 to MIS 5e, integrating sediment of 1 cm core depth. Temporal resolution of these samples ranges from 140 to 960 years per sample. For the period between 430 and 405 kyrs ago (end of MIS 12 to MIS 11c), 13 samples of 0.5-1.3 g of dry sediment from ICDP core 5011-1 were taken for MA analyses, integrating sediment of 2 cm core depth. Eight of these 13 samples are from the same core depths as were previously analysed for pollen (Melles et al., 2012). Temporal resolution of these samples varies between 200 and 970 years per sample comparable to core PG1351. Across all samples, temporal resolution is 333 ± 273 years per sample, giving centennial- to millennial scale averages. We extracted the polar lipids of all MA samples using a Dionex Accelerated Solvent Extraction system (ASE 350, ThermoFisher Scientific) at 100°C, 103 bar pressure and two extraction cycles (20 min static time) with 100 % methanol, after an ASE cycle with 100 % dichloromethane. For every sample sequence (n=13-18), we extracted a blank ASE cell and included it in all further steps. We added 60 ng of deuterated levoglucosan (C6H3D7O5; dLVG; Th. Geyer GmbH & Co. KG) as internal standard, and filtered the extract over a PTFE filter using acetonitrile and 5 % HPLC-grade water. We analysed the extracts with an Ultimate 3000 RS ultra-high performance liquid chromatograph (U-HPLC) with thermostated autosampler and column oven coupled to a Q Exactive Plus Orbitrap mass spectrometer (Quadrupole-Orbitrap MS; ThermoFisher Scientific) with heated electrospray injection (HESI) probe at GFZ Potsdam, using measurement conditions adapted from earlier studies (Hopmans et al., 2013;Schreuder et al., 2018;Dietze et al., 2019). Briefly, separation was achieved on two Xbridge BEH amide columns in series (2.1 x 150 mm, 3.5 um particle size) fitted with a 50 mm pre-column of the same material (Waters). The compounds were eluted (flow rate 0.2 mL min-1) with 100 % A for 15 minutes, followed by column cleaning with 100 % B for 15 min, and re-equilibration to starting conditions for 25 min. Eluent A was acetonitrile:water:triethylamine (92.5:7.5:0.01) and eluent B acetonitrile:water:triethylamine (70:30:0.01). HESI settings were as follows: sheath gas (N2) pressure 20 (arbitrary units), auxiliary gas (N2) pressure 3 (arbitrary units), auxiliary gas (N2) temperature of 50 ˚C, spray voltage -2.9 kV (negative ion mode), capillary temperature 300 °C, S-Lens 50 V. Detection was achieved by monitoring m/z 150-200 with a resolution of 280,000 ppm. Targeted data dependent MS2 (normalized collision energy 13 V) was performed on any signal within 10 ppm of m/z 161.0445 (calculated exact mass of deprotonated levoglucosan and its isomers) or m/z 168.0884 (calculated exact mass of deprotonated dLVG) with an isolation window of 0.4 m/z. The detection limit was 2.5 pg on column, based on injections of 0.5 to 5000 pg on column of authentic standards of LVG, MAN, and GAL (Santa Cruz Biotechnology) and dLVG. Integrations were performed on mass chromatograms within 3 ppm mass accuracy and corrected for relative response factors to dLVG (1.08 ± 0.10, 0.76 ± 0.10 and 0.24 ± 0.05 for LVG, MAN, and GAL, respectively), according to known authentic standard mixes injected before and after every measurement sequence and supported by characteristic isomer-specific MS² data. All samples were corrected by subtracting the maximum MA concentrations in the blank duplicates of each ASE sequence. To account for biases due to sediment properties and sedimentation rates, MA influxes (mass accumulation rates in ng cm-2 yr-1) were calculated by multiplying the concentrations (ng g-1) with the sample-specific dry bulk densities (Melles et al., 2007;Wennrich et al., 2016), and the sample's sedimentation rates (cm yr-1) using the age-depth models presented by Nowaczyk et al. (2013) for the the PG1351 and the ICDP-5011-1 cores.

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    PANGAEA
    Dataset . 2020
    Data sources: B2FIND
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ PANGAEA - Data Publi...arrow_drop_down
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      PANGAEA
      Dataset . 2020
      Data sources: B2FIND
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    Authors: Andreev, Andrei A; Dietze, Elisabeth; Herzschuh, Ulrike;

    Pollen from sediment core PG1351 was analysed by Lozhkin et al. (2007), but there was no sediment left to sample the same core depths for Monosaccharide anhydrides (MA) analyses (doi:10.1594/PANGAEA.915603). Therefore, we sampled 19 of the 44 MA sample's core depths for parallel pollen analyses to enable a direct comparison of MA and pollen records without age bias. These new pollen samples were prepared using standard pollen preparation procedures as have been used previously for the El'gygytgyn sediments (Andreev et al., 2012).

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    PANGAEA
    Dataset . 2020
    Data sources: B2FIND
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      PANGAEA
      Dataset . 2020
      Data sources: B2FIND
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    Authors: Waelbroeck, Claire; Lougheed, Bryan C; Vázquez Riveiros, Natalia; Missiaen, Lise; +59 Authors

    Rapid changes in ocean circulation and climate have been observed in marine-sediment and ice cores over the last glacial period and deglaciation, highlighting the non-linear character of the climate system and underlining the possibility of rapid climate shifts in response to anthropogenic greenhouse gas forcing. To date, these rapid changes in climate and ocean circulation are still not fully explained. One obstacle hindering progress in our understanding of the interactions between past ocean circulation and climate changes is the difficulty of accurately dating marine cores. Here, we present a set of 92 marine sediment cores from the Atlantic Ocean for which we have established age-depth models that are consistent with the Greenland GICC05 ice core chronology, and computed the associated dating uncertainties, using a new deposition modeling technique. This is the first set of consistently dated marine sediment cores enabling paleoclimate scientists to evaluate leads/lags between circulation and climate changes over vast regions of the Atlantic Ocean. Moreover, this data set is of direct use in paleoclimate modeling studies.

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    PANGAEA
    Dataset . 2019
    Data sources: B2FIND
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      PANGAEA
      Dataset . 2019
      Data sources: B2FIND
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    Authors: Roldão, Élia; A. Jorge Parola; Vilarigues, Márcia; Lavédrine, Bertrand; +1 Authors

    Aiming at contributing to the preservation of black and white (B&W) film-based negatives held by Portuguese archives, four photographic collections from the first half of the twentieth century were selected for study. During the macro assessment of the collections the preservation condition and hues found in photographic negatives from the Elmano Cunha e Costa (ECC) were noticed, distinguishing this collection from the remaining ones. Additional attention was given considering that the ECC collection was formed in a colonial context in the 1930s, while the others were formed on the Portugal mainland. The ECC collection results from an ethnographic survey of Angolan tribes recorded with B&W film-based negatives. In this collection, sets of negatives with pink, lemon yellow, greenish, orange brownish, and red brownish hues were found. To identify the origin of such hues, the image layer was analysed by microscale energy-dispersive X-ray fluorescence (μ EDXRF) and scanning electron microscopy with energy-dispersive X-ray spectroscopy (SEM-EDX). Additionally, to assess the base decay and its effect on the formation of hues, the plastic supports were characterized by Fourier transform infrared microscopy (μ FTIR). To complement the assessment of the film-base decay, pH was measured by using combined microelectrodes. The identification of mercury, iodine, chromium, and iron by μ EDXRF allowed correlation of the hues found in the negatives with chemical corrective treatments performed to improve the image quality. SEM-EDX confirmed those results and proved that the elements found were in the photographic emulsion layer. The results obtained are relevant since the hues identified may now be used as markers to indicate the technical work performed on colonial photography. Additionally, the visual and molecular assessment of the negatives’ supports (good to fair condition) allow proposing that the original storage conditions may have had a beneficial contribution to their present condition.

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    Dataset . 2019
    License: CC BY
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    Dataset . 2019
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      Dataset . 2019
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      Dataset . 2019
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Pérez-Pérez, Martin; Pérez-Rodríguez, Gael; Blanco-Míguez, Aitor; Fdez-Riverola, Florentino; +3 Authors

    Additional file 3. Processed document IDs during the TIPS competition.

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    Dataset . 2019
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      Dataset . 2019
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Pérez-Pérez, Martin; Pérez-Rodríguez, Gael; Blanco-Míguez, Aitor; Fdez-Riverola, Florentino; +3 Authors

    Additional file 1. Description of the structure and the restrictions of the supported formats.

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    Dataset . 2019
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      Dataset . 2019
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Monteiro, Miguel; Reino, Luís; Melo, Martim; Beja, Pedro; +6 Authors

    Species lists referred in Tables 1 and 2 showing correspondence between scientific and common names between IOC and BirdLife Internaction/IUCN nomenclatures : Explanation note: Nomenclatural differences between International Ornithological Council and BirdLife International/IUCN lists (2016) for endemic species and endemic subspecies of São Tomé and Príncipe.

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    ZENODO
    Dataset . 2016
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      ZENODO
      Dataset . 2016
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11 Research products
  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Paladugu, Roshan; Richter, Kristine Korzow; Valente, Maria João; Gabriel, Sonia; +3 Authors

    MALDI-TOF-MS spectra of extracted collagen from modern reference and archaeological bone samples to develop markers for Zooarchaeology by Mass Spectrometry (ZooMS) to distinguish between Equus species. For each sample digestions were done in both trypsin and chymotrypsin separately. Information about the species of the samples can be found in 'sample metadata.csv' file. Information on the extraction and digestion protocol can be found in the associated manuscript. The sequence data contains alignments of the proteins COL1A1 and COL1A2 for available Equus collagen protein sequences. More information on these files can be found in the corresponding manuscript to this dataset.

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    ZENODO
    Dataset . 2022
    License: CC BY
    Data sources: Datacite; Sygma
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    ZENODO
    Dataset . 2022
    License: CC BY
    Data sources: ZENODO; Sygma
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      ZENODO
      Dataset . 2022
      License: CC BY
      Data sources: Datacite; Sygma
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      ZENODO
      Dataset . 2022
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      Data sources: ZENODO; Sygma
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Pfrengle, Saskia; Neukamm, Judith; Guellil, Meriam; Keller, Marcel; +35 Authors

    Additional file 3: Table S5. SNP distance matrix.

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    Dataset . 2021
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    Dataset . 2021
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      Dataset . 2021
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      Dataset . 2021
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Pfrengle, Saskia; Neukamm, Judith; Guellil, Meriam; Keller, Marcel; +35 Authors

    Additional file 2: Table S4. Result table of the SNP effect analysis.

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    Dataset . 2021
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    Dataset . 2021
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      Dataset . 2021
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      Dataset . 2021
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