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7 Research products

  • Digital Humanities and Cultural Heritage
  • 2018-2022
  • Research data
  • IE

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: O'Reilly, Luke;

    A remotely operated vehicle mounted (ROV) vibrocorer rig acquired the two cores from the Porcupine Bank Canyon (NE Atlantic) and western Porcupine Bank (NE Atlantic) during the RH17002 and CE18011 research cruises. RH17002_VC7 is a 0.81 m ROV-vibrocore and was acquired from a cold-water coral mound summit on lip of the Porcupine Bank Canyon. CE18011_VC1 is a 1.30 m ROV-vibrocore and was acquired from cold-water coral mound summit on the western Porcupine Bank. To construct a geochronological framework, mixed benthic foraminifera (Cibicides lobatulus, Cibicides refulgens and Discanomalina coronata), monospecific planktic foraminifera (Globigerina bulloides) and cold-water coral pieces (Madrepora oculata) were subjected to radiometric analysis. Results were standardized using PaleoDataView (Langner and Mulitza, 2019) to allow applicability and consistency across synthesis. AMS 14C dates obtained from benthic and planktic foraminifera and CWC fragments collected from cores RH17002_VC7 and CE18011_VC1. Reservoir (res.) ages and error, calibrated (cal.) age determined from Paleo Data View (Langner and Mulitza, 2019). Age model (AM) age was determined using BACON (Blaauw and Christen, 2011). Aggradation rates (AR) are calculated through linear interpolation of acquired ages.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ PANGAEAarrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    PANGAEA
    Dataset . 2022
    Data sources: B2FIND
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ PANGAEAarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      PANGAEA
      Dataset . 2022
      Data sources: B2FIND
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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  • Authors: Phan, BaDoi; Pfenning, Andreas;

    Dataset from: "Leveraging Base Pair Mammalian Constraint to Understand Genetic Variation and Human Disease" Abstract: Although thousands of genomic regions have been associated with heritable human diseases, attempts to elucidate biological mechanisms are impeded by a general inability to discern which genomic positions are functionally important. Evolutionary constraint is a powerful predictor of function that is agnostic to cell type or disease mechanism. Here, single base phyloP scores from the whole genome alignment of 240 placental mammals identified 3.5% of bases in the human genome as significantly constrained and very likely functional. We compared these scores to large-scale genome annotation, genome-wide association studies (GWAS), copy number variation, clinical genetics findings, and cancer data sets. Evolutionary constrained positions are enriched for variants explaining common disease heritability more than any other functional annotation. Our results improve variant annotation but also highlight that the regulatory landscape of the human genome still needs to be further explored and linked to disease. Dataset description: functional annotations of the human common genetic variants including conservation metrics across 240 mammals and subset of primates. These annotations are to be used in conjunction with the polyfun method.

    https://doi.org/10.1...arrow_drop_down
    https://doi.org/10.1184/r1/193...
    Dataset . 2022
    License: CC BY
    Data sources: Datacite
    https://doi.org/10.1184/r1/193...
    Dataset . 2022
    License: CC BY
    Data sources: Datacite
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      https://doi.org/10.1...arrow_drop_down
      https://doi.org/10.1184/r1/193...
      Dataset . 2022
      License: CC BY
      Data sources: Datacite
      https://doi.org/10.1184/r1/193...
      Dataset . 2022
      License: CC BY
      Data sources: Datacite
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Team, Scientific Data Curation;

    This dataset contains key characteristics about the data described in the Data Descriptor Lake Ohrid’s tephrochronological dataset reveals 1.36 Ma of Mediterranean explosive volcanic activity. Contents: 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ figsharearrow_drop_down
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    figshare
    Dataset . 2021
    License: CC 0
    Data sources: Datacite
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    figshare
    Dataset . 2021
    License: CC 0
    Data sources: Datacite
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ figsharearrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      figshare
      Dataset . 2021
      License: CC 0
      Data sources: Datacite
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      figshare
      Dataset . 2021
      License: CC 0
      Data sources: Datacite
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: O'Sullivan, Gary J; Daly, J Stephen; Murray, John; Ó'Gogáin, Aodhán; +4 Authors

    These data are trace element concentrations and U-Pb isotope ratios from phosphate nodules in Carboniferous-age carbonates, shales and phosphorites in Co. Clare, western Ireland. Sampling locations (both in degrees and as UTM coordinates) are also included. Mineralogically, the analysed material is apatite (species: carbonate-fluorapatite). These data are being used to support a paper which is currently under review. Data were collected by LA-Q-ICPMS in the National Centre for Isotope Geochemistry in University College Dublin, and at the iCRAG Lab @ Trinity College Dublin. Both labs are in Dublin, Ireland. Spots or portions of ablations intercepting inclusions of non-apatite phases have been excluded to ensure the accuracy of reported data. Appropriate reference materials (RMs) were used to reduce and quality-control data, including: Madagascar Fluorapatite; NIST612 glass; BHVO2G glass; Durango Fluorapatite; McClure Mountain Fluorapatite; and Bamble 2 Flour/Chlor-apatite. All secondary RMs reproduced their respective U-Pb isotopic ages or element concentrations within acceptable ranges. These processed data were reduced from raw data using Iolite 3 software. The analysis was chiefly funded under an Irish Research Council Postdoctoral Fellowship Award awarded to Gary J O'Sullivan (GOIPD/2019/906).

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ PANGAEA - Data Publi...arrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    PANGAEA
    Dataset . 2021
    Data sources: B2FIND
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ PANGAEA - Data Publi...arrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      PANGAEA
      Dataset . 2021
      Data sources: B2FIND
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Debruyne, Christophe; Munnelly, Gary; Kilgallon, Lynn; O'Sullivan, Declan; +1 Authors

    This dataset contains a CSV file and an RDF Turtle file. Both files contain information on a few people mentioned in the Irish Exchequer Payments 1270-1326, a book written by Connolly, P and published by the Irish Manuscripts Commission in 1998. A historian transcribed those people in a CSV file, subsequently transformed into RDF using an R2RML mapping. This dataset contains the records and the output of a handful of people transcribed in this way. This dataset illustrates how the Beyond 2022 project avails of CIDOC-CRM to populate its knowledge graph. Beyond 2022 is funded by the Government of Ireland, through the Department of Culture, Heritage and the Gaeltacht, under the Project Ireland 2040 framework. The project is also partially supported by the ADAPT Centre for Digital Content Technology under the SFI Research Centres Programme (Grant 13/RC/2106).

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
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    ZENODO
    Dataset . 2020
    License: CC BY
    Data sources: ZENODO
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    ZENODO
    Dataset . 2020
    License: CC BY
    Data sources: Datacite
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
      Dataset . 2020
      License: CC BY
      Data sources: ZENODO
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
      Dataset . 2020
      License: CC BY
      Data sources: Datacite
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Broderick, Michael P.; Anderson, Andrew J.; Di Liberto, Giovanni M.; Crosse, Michael J.; +1 Authors

    People routinely hear and understand speech at rates of 120–200 words per minute [1, 2]. Thus, speech comprehension must involve rapid, online neural mechanisms that process words’ meanings in an approximately time-locked fashion. However, in the context of continuous speech, electrophysiological evidence for such time-locked processing has been lacking. Whilst valuable insights into the semantic processing of speech have been provided by the “N400 component” of the event-related potential [3-6], this literature has been dominated by paradigms using incongruous words within specially constructed sentences, and may not accurately reflect natural, narrative speech comprehension. Building on the discovery that cortical activity “tracks” the dynamics of running speech [7-9], and psycholinguistic work both demonstrating [10-12] and modeling [13-15] how context rapidly impacts on word processing, we describe a new approach for deriving an electrophysiological correlate of natural speech comprehension. We used a computational model [16] to quantify the meaning carried by each word based on how semantically dissimilar it was to its preceding context and then regressed this quantity against electroencephalographic (EEG) data recorded from subjects as they listened to narrative speech. This produced a prominent negativity at a time-lag of 200–600 ms on centro-parietal EEG channels, characteristics common to the N400. Applying this approach to EEG datasets involving time-reversed speech, cocktail party attention and audiovisual speech-in-noise demonstrated that this response was very sensitive to whether or not subjects understood the speech they heard. These findings demonstrate that, when successfully comprehending natural speech, the human brain responds to the contextual semantic content of each word in a relatively time-locked fashion. Cocktail Party DatasetCocktail Party.zipN400 DatasetN400.zipNatural Speech - Reverse DatasetNatural Speech - Reverse.zipNatural Speech DatasetNatural Speech.zipSpeech in Noise DatasetSpeech in Noise.zip

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    ZENODO
    Dataset . 2019
    License: CC 0
    Data sources: ZENODO
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    DANS-EASY
    Dataset . 2018
    Data sources: B2FIND
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
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      ZENODO
      Dataset . 2019
      License: CC 0
      Data sources: ZENODO
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      DANS-EASY
      Dataset . 2018
      Data sources: B2FIND
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Martiniano, Rui; Cassidy, Lara M.; Ó'Maoldúin, Ros; McLaughlin, Russell; +14 Authors

    We analyse new genomic data (0.05–2.95x) from 14 ancient individuals from Portugal distributed from the Middle Neolithic (4200–3500 BC) to the Middle Bronze Age (1740–1430 BC) and impute genomewide diploid genotypes in these together with published ancient Eurasians. While discontinuity is evident in the transition to agriculture across the region, sensitive haplotype-based analyses suggest a significant degree of local hunter-gatherer contribution to later Iberian Neolithic populations. A more subtle genetic influx is also apparent in the Bronze Age, detectable from analyses including haplotype sharing with both ancient and modern genomes, D-statistics and Y-chromosome lineages. However, the limited nature of this introgression contrasts with the major Steppe migration turnovers within third Millennium northern Europe and echoes the survival of non-Indo-European language in Iberia. Changes in genomic estimates of individual height across Europe are also associated with these major cultural transitions, and ancestral components continue to correlate with modern differences in stature. Index for VCF fileIndex for VCF filepost_imputation_Martiniano_et_al_2017_public.vcf.gz.tbiVCF file containing imputed genotype data belonging to 67 newly sequenced and publicly available ancient samples.VCF file containing imputed genotype data belonging to 67 newly sequenced and publicly available ancient samples which we analysed in Martiniano et al. (2017).post_imputation_Martiniano_et_al_2017_public.vcf.gzREADME_Martiniano_et_al_2017Description of the methods used for genotype imputation.

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    ZENODO
    Dataset . 2018
    License: CC 0
    Data sources: ZENODO
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    DANS-EASY
    Dataset . 2017
    Data sources: B2FIND
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    DRYAD; NARCIS
    Dataset . 2018
    License: CC 0
    Data sources: Datacite; NARCIS
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      ZENODO
      Dataset . 2018
      License: CC 0
      Data sources: ZENODO
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      DANS-EASY
      Dataset . 2017
      Data sources: B2FIND
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      DRYAD; NARCIS
      Dataset . 2018
      License: CC 0
      Data sources: Datacite; NARCIS
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7 Research products
  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: O'Reilly, Luke;

    A remotely operated vehicle mounted (ROV) vibrocorer rig acquired the two cores from the Porcupine Bank Canyon (NE Atlantic) and western Porcupine Bank (NE Atlantic) during the RH17002 and CE18011 research cruises. RH17002_VC7 is a 0.81 m ROV-vibrocore and was acquired from a cold-water coral mound summit on lip of the Porcupine Bank Canyon. CE18011_VC1 is a 1.30 m ROV-vibrocore and was acquired from cold-water coral mound summit on the western Porcupine Bank. To construct a geochronological framework, mixed benthic foraminifera (Cibicides lobatulus, Cibicides refulgens and Discanomalina coronata), monospecific planktic foraminifera (Globigerina bulloides) and cold-water coral pieces (Madrepora oculata) were subjected to radiometric analysis. Results were standardized using PaleoDataView (Langner and Mulitza, 2019) to allow applicability and consistency across synthesis. AMS 14C dates obtained from benthic and planktic foraminifera and CWC fragments collected from cores RH17002_VC7 and CE18011_VC1. Reservoir (res.) ages and error, calibrated (cal.) age determined from Paleo Data View (Langner and Mulitza, 2019). Age model (AM) age was determined using BACON (Blaauw and Christen, 2011). Aggradation rates (AR) are calculated through linear interpolation of acquired ages.

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    PANGAEA
    Dataset . 2022
    Data sources: B2FIND
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      PANGAEA
      Dataset . 2022
      Data sources: B2FIND
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  • Authors: Phan, BaDoi; Pfenning, Andreas;

    Dataset from: "Leveraging Base Pair Mammalian Constraint to Understand Genetic Variation and Human Disease" Abstract: Although thousands of genomic regions have been associated with heritable human diseases, attempts to elucidate biological mechanisms are impeded by a general inability to discern which genomic positions are functionally important. Evolutionary constraint is a powerful predictor of function that is agnostic to cell type or disease mechanism. Here, single base phyloP scores from the whole genome alignment of 240 placental mammals identified 3.5% of bases in the human genome as significantly constrained and very likely functional. We compared these scores to large-scale genome annotation, genome-wide association studies (GWAS), copy number variation, clinical genetics findings, and cancer data sets. Evolutionary constrained positions are enriched for variants explaining common disease heritability more than any other functional annotation. Our results improve variant annotation but also highlight that the regulatory landscape of the human genome still needs to be further explored and linked to disease. Dataset description: functional annotations of the human common genetic variants including conservation metrics across 240 mammals and subset of primates. These annotations are to be used in conjunction with the polyfun method.

    https://doi.org/10.1...arrow_drop_down
    https://doi.org/10.1184/r1/193...
    Dataset . 2022
    License: CC BY
    Data sources: Datacite
    https://doi.org/10.1184/r1/193...
    Dataset . 2022
    License: CC BY
    Data sources: Datacite
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      https://doi.org/10.1184/r1/193...
      Dataset . 2022
      License: CC BY
      Data sources: Datacite
      https://doi.org/10.1184/r1/193...
      Dataset . 2022
      License: CC BY
      Data sources: Datacite
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Team, Scientific Data Curation;

    This dataset contains key characteristics about the data described in the Data Descriptor Lake Ohrid’s tephrochronological dataset reveals 1.36 Ma of Mediterranean explosive volcanic activity. Contents: 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format

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    figshare
    Dataset . 2021
    License: CC 0
    Data sources: Datacite
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    figshare
    Dataset . 2021
    License: CC 0
    Data sources: Datacite
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      figshare
      Dataset . 2021
      License: CC 0
      Data sources: Datacite
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      figshare
      Dataset . 2021
      License: CC 0
      Data sources: Datacite
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: O'Sullivan, Gary J; Daly, J Stephen; Murray, John; Ó'Gogáin, Aodhán; +4 Authors

    These data are trace element concentrations and U-Pb isotope ratios from phosphate nodules in Carboniferous-age carbonates, shales and phosphorites in Co. Clare, western Ireland. Sampling locations (both in degrees and as UTM coordinates) are also included. Mineralogically, the analysed material is apatite (species: carbonate-fluorapatite). These data are being used to support a paper which is currently under review. Data were collected by LA-Q-ICPMS in the National Centre for Isotope Geochemistry in University College Dublin, and at the iCRAG Lab @ Trinity College Dublin. Both labs are in Dublin, Ireland. Spots or portions of ablations intercepting inclusions of non-apatite phases have been excluded to ensure the accuracy of reported data. Appropriate reference materials (RMs) were used to reduce and quality-control data, including: Madagascar Fluorapatite; NIST612 glass; BHVO2G glass; Durango Fluorapatite; McClure Mountain Fluorapatite; and Bamble 2 Flour/Chlor-apatite. All secondary RMs reproduced their respective U-Pb isotopic ages or element concentrations within acceptable ranges. These processed data were reduced from raw data using Iolite 3 software. The analysis was chiefly funded under an Irish Research Council Postdoctoral Fellowship Award awarded to Gary J O'Sullivan (GOIPD/2019/906).

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    PANGAEA
    Dataset . 2021
    Data sources: B2FIND
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      PANGAEA
      Dataset . 2021
      Data sources: B2FIND
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Debruyne, Christophe; Munnelly, Gary; Kilgallon, Lynn; O'Sullivan, Declan; +1 Authors

    This dataset contains a CSV file and an RDF Turtle file. Both files contain information on a few people mentioned in the Irish Exchequer Payments 1270-1326, a book written by Connolly, P and published by the Irish Manuscripts Commission in 1998. A historian transcribed those people in a CSV file, subsequently transformed into RDF using an R2RML mapping. This dataset contains the records and the output of a handful of people transcribed in this way. This dataset illustrates how the Beyond 2022 project avails of CIDOC-CRM to populate its knowledge graph. Beyond 2022 is funded by the Government of Ireland, through the Department of Culture, Heritage and the Gaeltacht, under the Project Ireland 2040 framework. The project is also partially supported by the ADAPT Centre for Digital Content Technology under the SFI Research Centres Programme (Grant 13/RC/2106).

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    ZENODO
    Dataset . 2020
    License: CC BY
    Data sources: ZENODO
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    ZENODO
    Dataset . 2020
    License: CC BY
    Data sources: Datacite
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      ZENODO
      Dataset . 2020
      License: CC BY
      Data sources: ZENODO
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      ZENODO
      Dataset . 2020
      License: CC BY
      Data sources: Datacite
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Broderick, Michael P.; Anderson, Andrew J.; Di Liberto, Giovanni M.; Crosse, Michael J.; +1 Authors

    People routinely hear and understand speech at rates of 120–200 words per minute [1, 2]. Thus, speech comprehension must involve rapid, online neural mechanisms that process words’ meanings in an approximately time-locked fashion. However, in the context of continuous speech, electrophysiological evidence for such time-locked processing has been lacking. Whilst valuable insights into the semantic processing of speech have been provided by the “N400 component” of the event-related potential [3-6], this literature has been dominated by paradigms using incongruous words within specially constructed sentences, and may not accurately reflect natural, narrative speech comprehension. Building on the discovery that cortical activity “tracks” the dynamics of running speech [7-9], and psycholinguistic work both demonstrating [10-12] and modeling [13-15] how context rapidly impacts on word processing, we describe a new approach for deriving an electrophysiological correlate of natural speech comprehension. We used a computational model [16] to quantify the meaning carried by each word based on how semantically dissimilar it was to its preceding context and then regressed this quantity against electroencephalographic (EEG) data recorded from subjects as they listened to narrative speech. This produced a prominent negativity at a time-lag of 200–600 ms on centro-parietal EEG channels, characteristics common to the N400. Applying this approach to EEG datasets involving time-reversed speech, cocktail party attention and audiovisual speech-in-noise demonstrated that this response was very sensitive to whether or not subjects understood the speech they heard. These findings demonstrate that, when successfully comprehending natural speech, the human brain responds to the contextual semantic content of each word in a relatively time-locked fashion. Cocktail Party DatasetCocktail Party.zipN400 DatasetN400.zipNatural Speech - Reverse DatasetNatural Speech - Reverse.zipNatural Speech DatasetNatural Speech.zipSpeech in Noise DatasetSpeech in Noise.zip

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    ZENODO
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    Dataset . 2018
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
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      ZENODO
      Dataset . 2019
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      Data sources: ZENODO
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      Dataset . 2018
      Data sources: B2FIND
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Martiniano, Rui; Cassidy, Lara M.; Ó'Maoldúin, Ros; McLaughlin, Russell; +14 Authors

    We analyse new genomic data (0.05–2.95x) from 14 ancient individuals from Portugal distributed from the Middle Neolithic (4200–3500 BC) to the Middle Bronze Age (1740–1430 BC) and impute genomewide diploid genotypes in these together with published ancient Eurasians. While discontinuity is evident in the transition to agriculture across the region, sensitive haplotype-based analyses suggest a significant degree of local hunter-gatherer contribution to later Iberian Neolithic populations. A more subtle genetic influx is also apparent in the Bronze Age, detectable from analyses including haplotype sharing with both ancient and modern genomes, D-statistics and Y-chromosome lineages. However, the limited nature of this introgression contrasts with the major Steppe migration turnovers within third Millennium northern Europe and echoes the survival of non-Indo-European language in Iberia. Changes in genomic estimates of individual height across Europe are also associated with these major cultural transitions, and ancestral components continue to correlate with modern differences in stature. Index for VCF fileIndex for VCF filepost_imputation_Martiniano_et_al_2017_public.vcf.gz.tbiVCF file containing imputed genotype data belonging to 67 newly sequenced and publicly available ancient samples.VCF file containing imputed genotype data belonging to 67 newly sequenced and publicly available ancient samples which we analysed in Martiniano et al. (2017).post_imputation_Martiniano_et_al_2017_public.vcf.gzREADME_Martiniano_et_al_2017Description of the methods used for genotype imputation.

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    ZENODO
    Dataset . 2018
    License: CC 0
    Data sources: ZENODO
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    DANS-EASY
    Dataset . 2017
    Data sources: B2FIND
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