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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Elodie Fache; Hannah Fair;

    Based on the cross-referencing of ethnographic materials collected in Fiji and Vanuatu, this article explores the diverse ways faith and climate change are connected together and how these connections are sustained and transformed over time. It does so through the prism of three ‘practices of assemblage’ identified by Tania Murray Li, namely forging alignments, authorising knowledge, and reassembling. It emphasises the partnership and combined efficacy of faith-based organisations and the Bible in these practices, while revealing the role of various other actants including God, NGOs, youth activists, cyclones, a Ni-Vanuatu canoe, and Fiji’s Presidency of COP23. This approach highlights the coexistence, in both Fiji and Vanuatu, of a religiously informed and adaptation-oriented environmental stewardship narrative, stressing human responsibility in the face of climate change, with a counter-narrative considering climate change as God’s business. This coexistence sometimes creates tensions between worldly and religious responses to climate change. These different religious perspectives of climate change can also be deployed as a political resource in nation-building processes, regional power relations, and international climate negotiations. In Oceania indeed, climate change appears as a new arena in which the inextricable entanglement of Christianity and politics is revealed.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Oxford University Re...arrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Horizon / Pleins textes
    Other literature type . 2020
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Oxford University Re...arrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Horizon / Pleins textes
      Other literature type . 2020
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Drucker, Dorothée; Stevens, Rhiannon; Germonpré, Mietje; Sablin, Mikhail, V; +2 Authors

    AbstractHigher δ15N values in bone collagen of mammoth (Mammuthus primigenius) compared with coeval large herbivores is a classic trait of the mammoth steppe. An exception applies to the Epigravettian site of Mezhyrich (ca. 18–17.4 ka cal BP) in the central East European plains, where mammoth bones have δ15N values equivalent to or in a lower range than those of horse specimens (Equussp.). We expanded our preliminary dataset to a larger sampling size of mammoth, other large herbivores, and carnivores from contemporaneous and nearby sites of Buzhanka 2, Eliseevichi, and Yudinovo. The unusual low mammoth δ15N values were confirmed at Buzhanka 2 and for some specimens from Eliseevichi, while most individuals from Yudinovo displayed the expected high δ15N values, meaning similar to those of the large canids. The possibility of a contrast in migration pattern is not supported since the δ34S values, a marker of mobility, do not correlate with the δ15N values of mammoth bone collagen. No clear chronological tendency could be revealed, at least not at the scale of radiocarbon dating. The low range in δ15N values is likely to reflect a change in the specific niche of the mammoth in the southern part of its distribution.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Quaternary Researcharrow_drop_down
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    UCL Discovery
    Article . 2018
    Data sources: UCL Discovery
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Quaternary Research
    Article . 2018 . Peer-reviewed
    License: Cambridge Core User Agreement
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Allan I. Solomon; Gérard Duchamp; Pawel Blasiak; Andrzej Horzela; +1 Authors

    We show that the combinatorial numbers known as {\em Bell numbers} are generic in quantum physics. This is because they arise in the procedure known as {\em Normal ordering} of bosons, a procedure which is involved in the evaluation of quantum functions such as the canonical partition function of quantum statistical physics, {\it inter alia}. In fact, we shall show that an evaluation of the non-interacting partition function for a single boson system is identical to integrating the {\em exponential generating function} of the Bell numbers, which is a device for encapsulating a combinatorial sequence in a single function. We then introduce a remarkable equality, the Dobinski relation, and use it to indicate why renormalisation is necessary in even the simplest of perturbation expansions for a partition function. Finally we introduce a global algebraic description of this simple model, giving a Hopf algebra, which provides a starting point for extensions to more complex physical systems.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Mémoires en Sciences...arrow_drop_down
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    arXiv.org e-Print Archive
    Other literature type . Preprint . 2010
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Journal of Physics : Conference Series
    Article . 2011 . Peer-reviewed
    Data sources: Crossref
    https://doi.org/10.48550/arxiv...
    Article . 2010
    License: arXiv Non-Exclusive Distribution
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Mémoires en Sciences...arrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      arXiv.org e-Print Archive
      Other literature type . Preprint . 2010
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Journal of Physics : Conference Series
      Article . 2011 . Peer-reviewed
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      https://doi.org/10.48550/arxiv...
      Article . 2010
      License: arXiv Non-Exclusive Distribution
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Leplongeon, Alice;

    During the Nubia Salvage Campaign and the subsequent expeditions from the 1960's to the 1980's, numerous sites attributed to the Late Palaeolithic (~25-15 ka) were found in the Nile Valley, particularly in Nubia and Upper Egypt. This region is one of the few to have allowed human occupations during the dry Marine Isotope Stage 2 and is therefore key to understanding how human populations adapted to environmental changes at this time. This paper focuses on two sites located in Upper Egypt, excavated by the Combined Prehistoric Expedition: E71K18, attributed to the Afian industry and E71K20, attributed to the Silsilian industry. It aims to review the geomorphological and chronological evidence of the sites, present a technological analysis of the lithic assemblages in order to provide data that can be used in detailed comparative studies, which will allow discussion of technological variability in the Late Palaeolithic of the Nile Valley and its place within the regional context. The lithic analysis relies on the chaîne opératoire concept combined with an attribute analysis to allow quantification. This study (1) casts doubts on the chronology of E71K18 and related Afian industry, which could be older or younger than previously suggested, highlights (2) distinct technological characteristics for the Afian and the Silsilian, as well as (3) similar technological characteristics which allow to group them under a same broad techno-cultural complex, distinct from those north or south of the area. ispartof: PLOS ONE vol:12 issue:12 ispartof: location:United States status: published

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ HAL Descartes; Mémoi...arrow_drop_down
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    DOAJ
    Article . 2017
    Data sources: DOAJ
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Lirias
    Article . 2017
    Data sources: Lirias
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    PLoS ONE
    Article . 2017
    Data sources: DOAJ-Articles
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Andon Tchechmedjiev; Amine Abdaoui; Vincent Emonet; Stella Zevio; +1 Authors

    Background: Despite a wide adoption of English in science, a significant amount of biomedical data are produced in other languages, such as French. Yet a majority of natural language processing or semantic tools as well as domain terminologies or ontologies are only available in English, and cannot be readily applied to other languages, due to fundamental linguistic differences. However, semantic resources are required to design semantic indexes and transform biomedical (text)data into knowledge for better information mining and retrieval. Results: We present the SIFR Annotator (http://bioportal.lirmm.fr/annotator), a publicly accessible ontology-based annotation web service to process biomedical text data in French. The service, developed during the Semantic Indexing of French Biomedical Data Resources (2013-2019) project is included in the SIFR BioPortal, an open platform to host French biomedical ontologies and terminologies based on the technology developed by the US National Center for Biomedical Ontology. The portal facilitates use and fostering of ontologies by offering a set of services-search, mappings, metadata, versioning, visualization, recommendation-including for annotation purposes. We introduce the adaptations and improvements made in applying the technology to French as well as a number of language independent additional features-implemented by means of a proxy architecture-in particular annotation scoring and clinical context detection. We evaluate the performance of the SIFR Annotator on different biomedical data, using available French corpora-Quaero (titles from French MEDLINE abstracts and EMEA drug labels) and CépiDC (ICD-10 coding of death certificates)-and discuss our results with respect to the CLEF eHealth information extraction tasks. Conclusions: We show the web service performs comparably to other knowledge-based annotation approaches in recognizing entities in biomedical text and reach state-of-the-art levels in clinical context detection (negation, experiencer, temporality). Additionally, the SIFR Annotator is the first openly web accessible tool to annotate and contextualize French biomedical text with ontology concepts leveraging a dictionary currently made of 28 terminologies and ontologies and 333 K concepts. The code is openly available, and we also provide a Docker packaging for easy local deployment to process sensitive (e.g., clinical) data in-house (https://github.com/sifrproject). International audience

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Europe PubMed Centra...arrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    DOAJ
    Article . 2018
    Data sources: DOAJ
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    BMC Bioinformatics
    Article . 2018
    Data sources: DOAJ-Articles
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    BMC Bioinformatics
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Europe PubMed Centra...arrow_drop_down
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      DOAJ
      Article . 2018
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      BMC Bioinformatics
      Article . 2018
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      BMC Bioinformatics
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Salomon, Ferréol; Goiran, Jean-Philippe; Pannuzi, Simona; Djerbi, Hatem; +1 Authors

    This study examines the long-term interactions between the well-known Roman city of Ostia and a river meander. Located at the mouth of the Tiber river, Ostia was a major harbor city that connected Rome to the Mediterranean Sea. Based on aerial photography and borehole analysis, the paleodynamics of the Fiume Morto's paleomeander are understood to be linked to the urban evolution of the city of Ostia. Four periods of evolution have been identified as a result of this interdisciplinary work: (1) the foundation of Ostia's urban center, in the 4th to 3rd century BC, occurred when the meander already existed; (2) between the 4th century BC and the 3rd century AD, human/environmental interactions contributed to the compound growth of the meander that possibly eroded an important Roman road linking Ostia to Rome; (3) from the Imperial period until the meander was cut off in AD 1557–1562, the constricted meander channel at the apex led to the stability of the downstream river channel; (4) the cutoff of the paleomeander was completed in 1562, leading to the filling of the paleochannel. These successive phases of channel evolution mark changing fluvial risks from the Roman period to today. International audience

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    Geoarchaeology
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    Geoarchaeology
    Article . 2016 . Peer-reviewed
    License: Wiley Online Library User Agreement
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    Authors: Clark, Andrew E.; D’Ambrosio, Conchita; Lepinteur, Anthony;

    AbstractJob insecurity is one of the risks that workers face on the labour market. As with any risk, individuals can choose to insure against it, and we here consider marriage as one potential source of this insurance. The 1999 rise in the French Delalande tax, paid by larger private firms when they laid off workers aged 50 or over, led to an exogenous rise in job insecurity for the uncovered (younger workers) in these larger firms. A difference-in-differences analysis using French panel data reveals that this greater job insecurity for the under-50s led to a significant rise in their probability of marriage, and especially when the partner had greater job security, consistent with marriage providing insurance against labour-market risk.

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    Review of Economics of the Household
    Article . 2022 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
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    EconStor
    Research . 2022
    Data sources: EconStor
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    Hyper Article en Ligne
    Other literature type . 2020
    SSRN Electronic Journal
    Article . 2022 . Peer-reviewed
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    EconStor
    Research . 2022
    Data sources: EconStor
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    Authors: Speller, Camilla Filomena; van den Hurk, Youri; Charpentier, Anne; Rodrigues, Ana; +7 Authors

    One contribution of 16 to a theme issue 'From DNA barcodes to biomes'. Over the last few centuries, many cetacean species have witnessed dramatic global declines due to industrial overharvesting and other anthropogenic influences, and thus are key targets for conservation. Whale bones recovered from archaeological and palaeontological contexts can provide essential baseline information on the past geographical distribution and abundance of species required for developing informed conservation policies. Here we review the challenges with identifying whale bones through traditional anatomical methods, as well as the opportunities provided by new molecular analyses. Through a case study focused on the North Sea, we demonstrate how the utility of this (pre)historic data is currently limited by a lack of accurate taxonomic information for the majority of ancient cetacean remains. We then discuss current opportunities presented by molecular identification methods such as DNA barcoding and collagen peptide mass fingerprinting (zooarchaeology by mass spectrometry), and highlight the importance of molecular identifications in assessing ancient species' distributions through a case study focused on the Mediterranean. We conclude by considering high-throughput molecular approaches such as hybridization capture followed by next-generation sequencing as cost-effective approaches for enhancing the ecological informativeness of these ancient sample sets. This article is part of the themed issue 'From DNA barcodes to biomes'. International audience

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    Philosophical Transactions of the Royal Society B Biological Sciences
    Article . 2016 . Peer-reviewed
    License: Royal Society Data Sharing and Accessibility
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    Apollo
    Article . 2021
    License: CC BY
    Data sources: Datacite
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    Apollo
    Article . 2016
    License: CC BY
    Data sources: Apollo
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    Authors: Maxime Lucas; Arthur Morris; Alex Townsend-Teague; Laurent Tichit; +2 Authors

    Summary: The temporal organization of biological systems is key for understanding them, but current methods for identifying this organization are often ad hoc and require prior knowledge. We present Phasik, a method that automatically identifies this multiscale organization by combining time series data (protein or gene expression) and interaction data (protein-protein interaction network). Phasik builds a (partially) temporal network and uses clustering to infer temporal phases. We demonstrate the method’s effectiveness by recovering well-known phases and sub-phases of the cell cycle of budding yeast and phase arrests of mutants. We also show its general applicability using temporal gene expression data from circadian rhythms in wild-type and mutant mouse models. We systematically test Phasik’s robustness and investigate the effect of having only partial temporal information. As time-resolved, multiomics datasets become more common, this method will allow the study of temporal regulation in lesser-known biological contexts, such as development, metabolism, and disease. Motivation: In many biological processes, such as the cell cycle, molecules are produced and translocated, interact with each other, and are destroyed following a strict temporal order to ensure proper execution of molecular events. An increasing amount of time-resolved data is becoming available trying to capture these ordered molecular states or phases of a biological system. To understand or predict these phases would yield crucial insight into the temporal organization of such systems.

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    SSRN Electronic Journal
    Article . Preprint . 2021
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    https://www.biorxiv.org/conten...
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    Cell Reports: Methods
    Article . 2023 . Peer-reviewed
    License: CC BY NC ND
    Data sources: Crossref
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    Cell Reports: Methods
    Article . 2023
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    SSRN Electronic Journal
    Article . 2021 . Peer-reviewed
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    Preprint . 2021
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      SSRN Electronic Journal
      Article . Preprint . 2021
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      Cell Reports: Methods
      Article . 2023 . Peer-reviewed
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      Cell Reports: Methods
      Article . 2023
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      Article . 2021 . Peer-reviewed
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      Hal-Diderot
      Preprint . 2021
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    Authors: Etienne Patin; Marie Lopez; Rebecca Grollemund; Paul Verdu; +20 Authors

    Bantu languages are spoken by about 310 million Africans, yet the genetic history of Bantu-speaking populations remains largely unexplored. We generated genomic data for 1318 individuals from 35 populations in western central Africa, where Bantu languages originated. We found that early Bantu speakers first moved southward, through the equatorial rainforest, before spreading toward eastern and southern Africa. We also found that genetic adaptation of Bantu speakers was facilitated by admixture with local populations, particularly for the HLA and LCT loci. Finally, we identified a major contribution of western central African Bantu speakers to the ancestry of African Americans, whose genomes present no strong signals of natural selection. Together, these results highlight the contribution of Bantu-speaking peoples to the complex genetic history of Africans and African Americans. This work was funded by the Institut Pasteur, the Centre National de la Recherche Scientifique (CNRS), Agence Nationale de la Recherche (ANR) grant AGRHUM (ANR-14-CE02-0003-01), and the “Histoire du Génome des Populations Humaines Gabonaises” project (Institut Pasteur/Republic of Gabon).

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    Horizon / Pleins textes
    Other literature type . 2017
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    Science
    Article . 2016
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Elodie Fache; Hannah Fair;

    Based on the cross-referencing of ethnographic materials collected in Fiji and Vanuatu, this article explores the diverse ways faith and climate change are connected together and how these connections are sustained and transformed over time. It does so through the prism of three ‘practices of assemblage’ identified by Tania Murray Li, namely forging alignments, authorising knowledge, and reassembling. It emphasises the partnership and combined efficacy of faith-based organisations and the Bible in these practices, while revealing the role of various other actants including God, NGOs, youth activists, cyclones, a Ni-Vanuatu canoe, and Fiji’s Presidency of COP23. This approach highlights the coexistence, in both Fiji and Vanuatu, of a religiously informed and adaptation-oriented environmental stewardship narrative, stressing human responsibility in the face of climate change, with a counter-narrative considering climate change as God’s business. This coexistence sometimes creates tensions between worldly and religious responses to climate change. These different religious perspectives of climate change can also be deployed as a political resource in nation-building processes, regional power relations, and international climate negotiations. In Oceania indeed, climate change appears as a new arena in which the inextricable entanglement of Christianity and politics is revealed.

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    Other literature type . 2020
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      Horizon / Pleins textes
      Other literature type . 2020
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    Authors: Drucker, Dorothée; Stevens, Rhiannon; Germonpré, Mietje; Sablin, Mikhail, V; +2 Authors

    AbstractHigher δ15N values in bone collagen of mammoth (Mammuthus primigenius) compared with coeval large herbivores is a classic trait of the mammoth steppe. An exception applies to the Epigravettian site of Mezhyrich (ca. 18–17.4 ka cal BP) in the central East European plains, where mammoth bones have δ15N values equivalent to or in a lower range than those of horse specimens (Equussp.). We expanded our preliminary dataset to a larger sampling size of mammoth, other large herbivores, and carnivores from contemporaneous and nearby sites of Buzhanka 2, Eliseevichi, and Yudinovo. The unusual low mammoth δ15N values were confirmed at Buzhanka 2 and for some specimens from Eliseevichi, while most individuals from Yudinovo displayed the expected high δ15N values, meaning similar to those of the large canids. The possibility of a contrast in migration pattern is not supported since the δ34S values, a marker of mobility, do not correlate with the δ15N values of mammoth bone collagen. No clear chronological tendency could be revealed, at least not at the scale of radiocarbon dating. The low range in δ15N values is likely to reflect a change in the specific niche of the mammoth in the southern part of its distribution.

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    UCL Discovery
    Article . 2018
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    Quaternary Research
    Article . 2018 . Peer-reviewed
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    Authors: Allan I. Solomon; Gérard Duchamp; Pawel Blasiak; Andrzej Horzela; +1 Authors

    We show that the combinatorial numbers known as {\em Bell numbers} are generic in quantum physics. This is because they arise in the procedure known as {\em Normal ordering} of bosons, a procedure which is involved in the evaluation of quantum functions such as the canonical partition function of quantum statistical physics, {\it inter alia}. In fact, we shall show that an evaluation of the non-interacting partition function for a single boson system is identical to integrating the {\em exponential generating function} of the Bell numbers, which is a device for encapsulating a combinatorial sequence in a single function. We then introduce a remarkable equality, the Dobinski relation, and use it to indicate why renormalisation is necessary in even the simplest of perturbation expansions for a partition function. Finally we introduce a global algebraic description of this simple model, giving a Hopf algebra, which provides a starting point for extensions to more complex physical systems.

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    arXiv.org e-Print Archive
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    Journal of Physics : Conference Series
    Article . 2011 . Peer-reviewed
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    Article . 2010
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    Authors: Leplongeon, Alice;

    During the Nubia Salvage Campaign and the subsequent expeditions from the 1960's to the 1980's, numerous sites attributed to the Late Palaeolithic (~25-15 ka) were found in the Nile Valley, particularly in Nubia and Upper Egypt. This region is one of the few to have allowed human occupations during the dry Marine Isotope Stage 2 and is therefore key to understanding how human populations adapted to environmental changes at this time. This paper focuses on two sites located in Upper Egypt, excavated by the Combined Prehistoric Expedition: E71K18, attributed to the Afian industry and E71K20, attributed to the Silsilian industry. It aims to review the geomorphological and chronological evidence of the sites, present a technological analysis of the lithic assemblages in order to provide data that can be used in detailed comparative studies, which will allow discussion of technological variability in the Late Palaeolithic of the Nile Valley and its place within the regional context. The lithic analysis relies on the chaîne opératoire concept combined with an attribute analysis to allow quantification. This study (1) casts doubts on the chronology of E71K18 and related Afian industry, which could be older or younger than previously suggested, highlights (2) distinct technological characteristics for the Afian and the Silsilian, as well as (3) similar technological characteristics which allow to group them under a same broad techno-cultural complex, distinct from those north or south of the area. ispartof: PLOS ONE vol:12 issue:12 ispartof: location:United States status: published

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    DOAJ
    Article . 2017
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    PLoS ONE
    Article . 2017
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    Authors: Andon Tchechmedjiev; Amine Abdaoui; Vincent Emonet; Stella Zevio; +1 Authors

    Background: Despite a wide adoption of English in science, a significant amount of biomedical data are produced in other languages, such as French. Yet a majority of natural language processing or semantic tools as well as domain terminologies or ontologies are only available in English, and cannot be readily applied to other languages, due to fundamental linguistic differences. However, semantic resources are required to design semantic indexes and transform biomedical (text)data into knowledge for better information mining and retrieval. Results: We present the SIFR Annotator (http://bioportal.lirmm.fr/annotator), a publicly accessible ontology-based annotation web service to process biomedical text data in French. The service, developed during the Semantic Indexing of French Biomedical Data Resources (2013-2019) project is included in the SIFR BioPortal, an open platform to host French biomedical ontologies and terminologies based on the technology developed by the US National Center for Biomedical Ontology. The portal facilitates use and fostering of ontologies by offering a set of services-search, mappings, metadata, versioning, visualization, recommendation-including for annotation purposes. We introduce the adaptations and improvements made in applying the technology to French as well as a number of language independent additional features-implemented by means of a proxy architecture-in particular annotation scoring and clinical context detection. We evaluate the performance of the SIFR Annotator on different biomedical data, using available French corpora-Quaero (titles from French MEDLINE abstracts and EMEA drug labels) and CépiDC (ICD-10 coding of death certificates)-and discuss our results with respect to the CLEF eHealth information extraction tasks. Conclusions: We show the web service performs comparably to other knowledge-based annotation approaches in recognizing entities in biomedical text and reach state-of-the-art levels in clinical context detection (negation, experiencer, temporality). Additionally, the SIFR Annotator is the first openly web accessible tool to annotate and contextualize French biomedical text with ontology concepts leveraging a dictionary currently made of 28 terminologies and ontologies and 333 K concepts. The code is openly available, and we also provide a Docker packaging for easy local deployment to process sensitive (e.g., clinical) data in-house (https://github.com/sifrproject). International audience

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    Article . 2018
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    BMC Bioinformatics
    Article . 2018
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    BMC Bioinformatics
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    Authors: Salomon, Ferréol; Goiran, Jean-Philippe; Pannuzi, Simona; Djerbi, Hatem; +1 Authors

    This study examines the long-term interactions between the well-known Roman city of Ostia and a river meander. Located at the mouth of the Tiber river, Ostia was a major harbor city that connected Rome to the Mediterranean Sea. Based on aerial photography and borehole analysis, the paleodynamics of the Fiume Morto's paleomeander are understood to be linked to the urban evolution of the city of Ostia. Four periods of evolution have been identified as a result of this interdisciplinary work: (1) the foundation of Ostia's urban center, in the 4th to 3rd century BC, occurred when the meander already existed; (2) between the 4th century BC and the 3rd century AD, human/environmental interactions contributed to the compound growth of the meander that possibly eroded an important Roman road linking Ostia to Rome; (3) from the Imperial period until the meander was cut off in AD 1557–1562, the constricted meander channel at the apex led to the stability of the downstream river channel; (4) the cutoff of the paleomeander was completed in 1562, leading to the filling of the paleochannel. These successive phases of channel evolution mark changing fluvial risks from the Roman period to today. International audience

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    Geoarchaeology
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    Geoarchaeology
    Article . 2016 . Peer-reviewed
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    Authors: Clark, Andrew E.; D’Ambrosio, Conchita; Lepinteur, Anthony;

    AbstractJob insecurity is one of the risks that workers face on the labour market. As with any risk, individuals can choose to insure against it, and we here consider marriage as one potential source of this insurance. The 1999 rise in the French Delalande tax, paid by larger private firms when they laid off workers aged 50 or over, led to an exogenous rise in job insecurity for the uncovered (younger workers) in these larger firms. A difference-in-differences analysis using French panel data reveals that this greater job insecurity for the under-50s led to a significant rise in their probability of marriage, and especially when the partner had greater job security, consistent with marriage providing insurance against labour-market risk.

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    Review of Economics of the Household
    Article . 2022 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
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    EconStor
    Research . 2022
    Data sources: EconStor
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    Hyper Article en Ligne
    Other literature type . 2020
    SSRN Electronic Journal
    Article . 2022 . Peer-reviewed
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    EconStor
    Research . 2022
    Data sources: EconStor
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    Authors: Speller, Camilla Filomena; van den Hurk, Youri; Charpentier, Anne; Rodrigues, Ana; +7 Authors

    One contribution of 16 to a theme issue 'From DNA barcodes to biomes'. Over the last few centuries, many cetacean species have witnessed dramatic global declines due to industrial overharvesting and other anthropogenic influences, and thus are key targets for conservation. Whale bones recovered from archaeological and palaeontological contexts can provide essential baseline information on the past geographical distribution and abundance of species required for developing informed conservation policies. Here we review the challenges with identifying whale bones through traditional anatomical methods, as well as the opportunities provided by new molecular analyses. Through a case study focused on the North Sea, we demonstrate how the utility of this (pre)historic data is currently limited by a lack of accurate taxonomic information for the majority of ancient cetacean remains. We then discuss current opportunities presented by molecular identification methods such as DNA barcoding and collagen peptide mass fingerprinting (zooarchaeology by mass spectrometry), and highlight the importance of molecular identifications in assessing ancient species' distributions through a case study focused on the Mediterranean. We conclude by considering high-throughput molecular approaches such as hybridization capture followed by next-generation sequencing as cost-effective approaches for enhancing the ecological informativeness of these ancient sample sets. This article is part of the themed issue 'From DNA barcodes to biomes'. International audience

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    Philosophical Transactions of the Royal Society B Biological Sciences
    Article . 2016 . Peer-reviewed
    License: Royal Society Data Sharing and Accessibility
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    Apollo
    Article . 2021
    License: CC BY
    Data sources: Datacite
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    Apollo
    Article . 2016
    License: CC BY
    Data sources: Apollo
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    Authors: Maxime Lucas; Arthur Morris; Alex Townsend-Teague; Laurent Tichit; +2 Authors

    Summary: The temporal organization of biological systems is key for understanding them, but current methods for identifying this organization are often ad hoc and require prior knowledge. We present Phasik, a method that automatically identifies this multiscale organization by combining time series data (protein or gene expression) and interaction data (protein-protein interaction network). Phasik builds a (partially) temporal network and uses clustering to infer temporal phases. We demonstrate the method’s effectiveness by recovering well-known phases and sub-phases of the cell cycle of budding yeast and phase arrests of mutants. We also show its general applicability using temporal gene expression data from circadian rhythms in wild-type and mutant mouse models. We systematically test Phasik’s robustness and investigate the effect of having only partial temporal information. As time-resolved, multiomics datasets become more common, this method will allow the study of temporal regulation in lesser-known biological contexts, such as development, metabolism, and disease. Motivation: In many biological processes, such as the cell cycle, molecules are produced and translocated, interact with each other, and are destroyed following a strict temporal order to ensure proper execution of molecular events. An increasing amount of time-resolved data is becoming available trying to capture these ordered molecular states or phases of a biological system. To understand or predict these phases would yield crucial insight into the temporal organization of such systems.

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    SSRN Electronic Journal
    Article . Preprint . 2021
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    Cell Reports: Methods
    Article . 2023 . Peer-reviewed
    License: CC BY NC ND
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    Cell Reports: Methods
    Article . 2023
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    SSRN Electronic Journal
    Article . 2021 . Peer-reviewed
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    Preprint . 2021
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      SSRN Electronic Journal
      Article . Preprint . 2021
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      Cell Reports: Methods
      Article . 2023 . Peer-reviewed
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    Authors: Etienne Patin; Marie Lopez; Rebecca Grollemund; Paul Verdu; +20 Authors

    Bantu languages are spoken by about 310 million Africans, yet the genetic history of Bantu-speaking populations remains largely unexplored. We generated genomic data for 1318 individuals from 35 populations in western central Africa, where Bantu languages originated. We found that early Bantu speakers first moved southward, through the equatorial rainforest, before spreading toward eastern and southern Africa. We also found that genetic adaptation of Bantu speakers was facilitated by admixture with local populations, particularly for the HLA and LCT loci. Finally, we identified a major contribution of western central African Bantu speakers to the ancestry of African Americans, whose genomes present no strong signals of natural selection. Together, these results highlight the contribution of Bantu-speaking peoples to the complex genetic history of Africans and African Americans. This work was funded by the Institut Pasteur, the Centre National de la Recherche Scientifique (CNRS), Agence Nationale de la Recherche (ANR) grant AGRHUM (ANR-14-CE02-0003-01), and the “Histoire du Génome des Populations Humaines Gabonaises” project (Institut Pasteur/Republic of Gabon).

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    Horizon / Pleins textes
    Other literature type . 2017
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    Science
    Article . 2016
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