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GIDB
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2019Publisher:bio.tools
Authors: Zhang, Xiaoyan; Wang, Ying;
Zhang, Xiaoyan; Wang, Ying;
Knowledge database for the automated curation and multidimensional analysis of molecular signatures in gastrointestinal (GI) cancer.
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bio.tools
Software . 2019
License: Unlicense
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bio.tools
Software . 2019
License: Unlicense
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ORGANISMS
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2018Publisher:bio.toolsFunded by:EC | MARBIGEN
EC| MARBIGEN
Authors: Jensen, Lars Juhl;
Jensen, Lars Juhl;
ORGANISMS is a weekly updated web resource that facilitates taxonomy-aware search and retrieval of articles. To this end, the the resource performs named entity recognition of terms from the NCBI Taxonomy on PubMed abstracts. The resource further provides download files of organism-disease and organism-tissue associations extracted through automatic text mining.
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bio.tools
Software . 2018
License: CC-BY-4.0
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bio.tools
Software . 2018
License: CC-BY-4.0
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MMX-I
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2018 Java Publisher:bio.tools
Authors: Bergamaschi, Antoine;
Bergamaschi, Antoine;
MMX-I is a data-processing software for multimodal X-ray imaging and tomography.
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bio.tools
Software . 2018
License: MIT
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bio.toolsarrow_drop_down
bio.tools
Software . 2018
License: MIT
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Biofactoid
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2021Publisher:bio.tools
Authors: Biofactoid;
Biofactoid;
Biofactoid is a web-based system that empowers authors to capture and share machine-readable summaries of molecular-level interactions described in their publications.
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bio.tools
Software . 2021
License: MIT
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bio.toolsarrow_drop_down
bio.tools
Software . 2021
License: MIT
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ProtTrans
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2022 Python Publisher:bio.tools
Authors: Elnaggar, Ahmed; Heinzinger, Michael; Dallago, Christian; Wang, Yu;
Elnaggar, Ahmed; Heinzinger, Michael; Dallago, Christian; Wang, Yu;
ProtTrans is providing state of the art pre-trained models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using various Transformers Models.
bio.toolsarrow_drop_down
bio.tools
Software . 2022
License: AFL-3.0
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bio.toolsarrow_drop_down
bio.tools
Software . 2022
License: AFL-3.0
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LAILAPS-QSM
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2018 Java Publisher:bio.tools
Authors: Lange, Matthias;
Lange, Matthias;
A machine learning approach for optimizing data searching and filtering from life-science databases. It is integrated in the LAILAPS search engine.
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bio.tools
Software . 2018
License: GPL-2.0
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bio.toolsarrow_drop_down
bio.tools
Software . 2018
License: GPL-2.0
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DISEASES
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2018Publisher:bio.toolsFunded by:EC | ASSET
EC| ASSET
Authors: Jensen, Lars Juhl;
Jensen, Lars Juhl;
DISEASES is a weekly updated web resource that integrates evidence on disease-gene associations from automatic text mining, manually curated literature, cancer mutation data, and genome-wide association studies. We further unify the evidence by assigning confidence scores that facilitate comparison of the different types and sources of evidence.
bio.toolsarrow_drop_down
bio.tools
Software . 2018
License: CC-BY-4.0
Data sources: bio.tools
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bio.toolsarrow_drop_down
bio.tools
Software . 2018
License: CC-BY-4.0
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COVID-19-CT-CXR
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2021 Python Publisher:bio.toolsFunded by:NIH | A framework to enhance ra..., NIH | A framework to enhance ra...
NIH| A framework to enhance radiology structured report by invoking NLP and DL: Models and Applications ,
NIH| A framework to enhance radiology structured report by invoking NLP and DL: Models and Applications
Authors: Lu, Zhiyong;
Lu, Zhiyong;
COVID-19-CT-CXR is a public database of COVID-19 CXR and CT images, which are automatically extracted from COVID-19-relevant articles from the PubMed Central Open Access (PMC-OA) Subset.
bio.toolsarrow_drop_down
bio.tools
Software . 2021
License: Freeware
Data sources: bio.tools
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bio.toolsarrow_drop_down
bio.tools
Software . 2021
License: Freeware
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ENQUIRE
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2023 Bash Publisher:bio.tools
Authors: Musella, Luca; Widmann, Max;
Musella, Luca; Widmann, Max;
ENQUIRE (Expanding Networks by Querying Unexpectedly Inter-Related Entities) offers an alternative to manual literature curation and database mining to study complex biomedical phenomena. ENQUIRE generates a co-occurrence network of genes and biomedical ontologies (MeSH) using a corpus of publications as input. The algorithm iteratively reconstructs and expands the network by generating PubMed queries from significant interrelations, until it obtains an interconnected network of genes and MeSH relevant to the input corpus.
bio.toolsarrow_drop_down
bio.tools
Software . 2023
License: GPL-3.0
Data sources: bio.tools
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bio.toolsarrow_drop_down
bio.tools
Software . 2023
License: GPL-3.0
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The following results are related to Digital Humanities and Cultural Heritage. Are you interested to view more results? Visit OpenAIRE - Explore.

GIDB
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2019Publisher:bio.tools
Authors: Zhang, Xiaoyan; Wang, Ying;
Zhang, Xiaoyan; Wang, Ying;
Knowledge database for the automated curation and multidimensional analysis of molecular signatures in gastrointestinal (GI) cancer.
bio.toolsarrow_drop_down
bio.tools
Software . 2019
License: Unlicense
Data sources: bio.tools
linkLink to
shareshareShare
citeCite
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bio.toolsarrow_drop_down
bio.tools
Software . 2019
License: Unlicense
Data sources: bio.tools
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ORGANISMS
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2018Publisher:bio.toolsFunded by:EC | MARBIGEN
EC| MARBIGEN
Authors: Jensen, Lars Juhl;
Jensen, Lars Juhl;
ORGANISMS is a weekly updated web resource that facilitates taxonomy-aware search and retrieval of articles. To this end, the the resource performs named entity recognition of terms from the NCBI Taxonomy on PubMed abstracts. The resource further provides download files of organism-disease and organism-tissue associations extracted through automatic text mining.
bio.toolsarrow_drop_down
bio.tools
Software . 2018
License: CC-BY-4.0
Data sources: bio.tools
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citeCite
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bio.toolsarrow_drop_down
bio.tools
Software . 2018
License: CC-BY-4.0
Data sources: bio.tools
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MMX-I
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2018 Java Publisher:bio.tools
Authors: Bergamaschi, Antoine;
Bergamaschi, Antoine;
MMX-I is a data-processing software for multimodal X-ray imaging and tomography.
bio.toolsarrow_drop_down
bio.tools
Software . 2018
License: MIT
Data sources: bio.tools
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bio.toolsarrow_drop_down
bio.tools
Software . 2018
License: MIT
Data sources: bio.tools
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Biofactoid
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2021Publisher:bio.tools
Authors: Biofactoid;
Biofactoid;
Biofactoid is a web-based system that empowers authors to capture and share machine-readable summaries of molecular-level interactions described in their publications.
bio.toolsarrow_drop_down
bio.tools
Software . 2021
License: MIT
Data sources: bio.tools
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bio.toolsarrow_drop_down
bio.tools
Software . 2021
License: MIT
Data sources: bio.tools
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ProtTrans
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2022 Python Publisher:bio.tools
Authors: Elnaggar, Ahmed; Heinzinger, Michael; Dallago, Christian; Wang, Yu;
Elnaggar, Ahmed; Heinzinger, Michael; Dallago, Christian; Wang, Yu;
ProtTrans is providing state of the art pre-trained models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using various Transformers Models.
bio.toolsarrow_drop_down
bio.tools
Software . 2022
License: AFL-3.0
Data sources: bio.tools
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bio.toolsarrow_drop_down
bio.tools
Software . 2022
License: AFL-3.0
Data sources: bio.tools
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LAILAPS-QSM
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2018 Java Publisher:bio.tools
Authors: Lange, Matthias;
Lange, Matthias;
A machine learning approach for optimizing data searching and filtering from life-science databases. It is integrated in the LAILAPS search engine.
bio.toolsarrow_drop_down
bio.tools
Software . 2018
License: GPL-2.0
Data sources: bio.tools
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bio.toolsarrow_drop_down
bio.tools
Software . 2018
License: GPL-2.0
Data sources: bio.tools
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DISEASES
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2018Publisher:bio.toolsFunded by:EC | ASSET
EC| ASSET
Authors: Jensen, Lars Juhl;
Jensen, Lars Juhl;
DISEASES is a weekly updated web resource that integrates evidence on disease-gene associations from automatic text mining, manually curated literature, cancer mutation data, and genome-wide association studies. We further unify the evidence by assigning confidence scores that facilitate comparison of the different types and sources of evidence.
bio.toolsarrow_drop_down
bio.tools
Software . 2018
License: CC-BY-4.0
Data sources: bio.tools
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bio.toolsarrow_drop_down
bio.tools
Software . 2018
License: CC-BY-4.0
Data sources: bio.tools
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COVID-19-CT-CXR
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2021 Python Publisher:bio.toolsFunded by:NIH | A framework to enhance ra..., NIH | A framework to enhance ra...
NIH| A framework to enhance radiology structured report by invoking NLP and DL: Models and Applications ,
NIH| A framework to enhance radiology structured report by invoking NLP and DL: Models and Applications
Authors: Lu, Zhiyong;
Lu, Zhiyong;
COVID-19-CT-CXR is a public database of COVID-19 CXR and CT images, which are automatically extracted from COVID-19-relevant articles from the PubMed Central Open Access (PMC-OA) Subset.
bio.toolsarrow_drop_down
bio.tools
Software . 2021
License: Freeware
Data sources: bio.tools
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bio.toolsarrow_drop_down
bio.tools
Software . 2021
License: Freeware
Data sources: bio.tools
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ENQUIRE
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 2023 Bash Publisher:bio.tools
Authors: Musella, Luca; Widmann, Max;
Musella, Luca; Widmann, Max;
ENQUIRE (Expanding Networks by Querying Unexpectedly Inter-Related Entities) offers an alternative to manual literature curation and database mining to study complex biomedical phenomena. ENQUIRE generates a co-occurrence network of genes and biomedical ontologies (MeSH) using a corpus of publications as input. The algorithm iteratively reconstructs and expands the network by generating PubMed queries from significant interrelations, until it obtains an interconnected network of genes and MeSH relevant to the input corpus.
bio.toolsarrow_drop_down
bio.tools
Software . 2023
License: GPL-3.0
Data sources: bio.tools
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bio.toolsarrow_drop_down
bio.tools
Software . 2023
License: GPL-3.0
Data sources: bio.tools
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