Advanced search in Research products
Research products
arrow_drop_down
Searching FieldsTerms
Any field
arrow_drop_down
includes
arrow_drop_down
Include:
The following results are related to Digital Humanities and Cultural Heritage. Are you interested to view more results? Visit OpenAIRE - Explore.
33 Research products, page 1 of 4

  • Digital Humanities and Cultural Heritage
  • Research software
  • Open Source

10
arrow_drop_down
Relevance
arrow_drop_down
  • Research software . 2019
    Open Source
    Authors: 
    Wu, Canglin;
    Publisher: bio.tools
    Project: NIH | Estimation Methods for No... (1R01AI087135-01)

    Restructured version of Gene Expression Omnibus (GEO) that provides a user friendly interface for curating GEO database

  • Research software . 2019
    Open Source
    Authors: 
    Lu, Zhiyong;
    Publisher: bio.tools

    Web-based application that provides computer-annotated biomedical concepts, such as genes and mutations, in PubMed citations and PMC full-text articles.

  • Research software . 2022
    Open Source Shell
    Authors: 
    Trieu, Hai-Long;
    Publisher: bio.tools

    BioVAE is a pre-trained latent variable language model for biomedical text mining. Large scale pre-trained language models (PLMs) have advanced state-of-the-art (SOTA) performance on various biomedical text mining tasks. The power of such PLMs can be combined with the a...

  • Research software . 2019
    Open Source
    Authors: 
    He, Oliver;
    Publisher: bio.tools
    Project: NIH | Ontology-based Informatio... (5R01AI081062-02)

    Ontology-based systematic representation and analysis of drug adverse events and its usage in study of adverse events given different patient age and disease conditions.

  • Research software . 2017
    Open Source JavaScript
    Authors: 
    Koumakis, Lefteris; Koumakis, Lefteris;
    Publisher: bio.tools
    Project: EC | iManageCancer (643529), EC | P-MEDICINE (270089)

    A web based framework that takes advantage of domain specific ontologies, and Natural Language Processing, aiming to empower exploration of biomedical resources via semantic-based querying and search. The NLP engine analyzes the input free-text query and translates it i...

  • Research software . 2018
    Open Source
    Authors: 
    Jensen, Lars Juhl; Gorodkin, Jan;
    Publisher: bio.tools
    Project: NIH | Admin Core (5U54CA189205-02)

    TISSUES is a weekly updated web resource that integrates evidence on tissue expression from manually curated literature, proteomics and transcriptomics screens, and automatic text mining. We map all evidence to common protein identifiers and Brenda Tissue Ontology terms...

  • Research software . 2021
    Open Source R
    Authors: 
    Arnold, James N.; Kordasti, Shahram;
    Publisher: bio.tools

    A computational framework for the non-specialist to profile cellular heterogeneity in cytometry datasets. The immunoCluster package uses the scDataViz bioconductor package’s vizualization tools and adaptation of the SingleCellExperiment data structure to build simple an...

  • Research software . 2018
    Open Source Python
    Authors: 
    Wang, Kai;
    Publisher: bio.tools

    Helps human reviewers interpret the clinical significance of variants. InterVar can take a pre-annotated or VCF file as input and generate automated interpretation on 18 criteria.

  • Research software . 2019
    Open Source Python
    Authors: 
    BioTM;
    Publisher: bio.tools
    Project: FCT | UID/CEC/00408/2013 (UID/CEC/00408/2013), FCT | PTDC/CCI-BIO/28685/2017 (PTDC/CCI-BIO/28685/2017), FCT | PD/BD/106083/2015 (PD/BD/106083/2015)

    Model to detect and classify relations in text, representing each entity of domain-specific ontologies as the sequence of its ancestors in the ontology. BO-LSTM is implemented as a recurrent neural network with long short-term memory units and using open biomedical onto...

  • Research software . 2019
    Open Source R
    Authors: 
    Davis, Sean;
    Publisher: bio.tools
    Project: EC | SOUND (633974), NIH | Accelerating Cancer Genom... (1U01CA214846-01), NIH | Bioconductor: An Open Com... (5U41HG004059-10), NIH | ADDRESSING THE ISSUE OF G... (1R01HG002020-01), NIH | Cancer Genomics:Integrati... (5U24CA180996-05)

    Package that facilitates access to extensive metadata in computable form covering the Bioconductor package ecosystem, facilitating downstream applications such as custom reporting, data and text mining of Bioconductor package text descriptions, graph analytics over pack...